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Published June 10, 2026 | Version v3.0.16
Software Open

broadinstitute/viral-ngs: v3.0.16

Authors/Creators

  • 1. Broad Institute
  • 2. MIT
  • 3. Merck
  • 4. Khipu Genomics
  • 5. DynoTx
  • 6. Novo Nordisk
  • 7. @broadinstitute

Description

What's Changed

  • Remove vestigial broad_utils module by @dpark01 in https://github.com/broadinstitute/viral-ngs/pull/1083
  • container-scan.yml: expand Trivy JSON output + repair auto-fix PR machinery by @dpark01 in https://github.com/broadinstitute/viral-ngs/pull/1084
  • fix: prevent cve-autofix pipeline from leaking GCP credential files by @dpark01 in https://github.com/broadinstitute/viral-ngs/pull/1087
  • ci(container-scan): install gitleaks before cve-autofix secret scan by @dpark01 in https://github.com/broadinstitute/viral-ngs/pull/1088
  • ci(container-scan): make gitleaks install-only (run: false) by @dpark01 in https://github.com/broadinstitute/viral-ngs/pull/1089
  • Auto-fix: address open CVE issues (2026-06-10) by @viral-ngs-autofix[bot] in https://github.com/broadinstitute/viral-ngs/pull/1090

New Contributors

  • @viral-ngs-autofix[bot] made their first contribution in https://github.com/broadinstitute/viral-ngs/pull/1090

Full Changelog: https://github.com/broadinstitute/viral-ngs/compare/v3.0.15...v3.0.16

Files

broadinstitute/viral-ngs-v3.0.16.zip

Files (12.1 MB)

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md5:23a7b4172860c72c6e82d77e5b8ce348
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Additional details

Related works

Is supplement to
Software: https://github.com/broadinstitute/viral-ngs/tree/v3.0.16 (URL)

Software

Repository URL
https://github.com/broadinstitute/viral-ngs