Published June 7, 2026 | Version v1
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Singularity images for transcription factor binding prediction benchmark

  • 1. ROR icon ETH Zurich

Contributors

  • 1. ROR icon ETH Zurich

Description

Singularity images used for data preprocessing and the single TF-binding predictions methods compared in the benchmark. 

The benchmark is preregistered under: https://osf.io/kv2tw/overview

The code and snakemake workflow using these images for the benchmark is available via: https://github.com/ETHZ-INS/TFB_Prediction_Benchmark

Deposited singluarity images: 

  • tfbench-bmo.sif: image used for BMO
  • tfbench-maxatac.sif: image used for maxATAC
  • tfbench-maxatac_gpu.sif: image used for training maxATAC with gpu support
  • tfbench-tfblearner.sif: image used for TFBlearner
  • tfbench-top.sif: image used for TOP
  • tfbench-preproc.sif: image used for preprocessing of the benchmark datasets

 

Files

Files (12.9 GB)

Name Size
md5:cdbe5b51e2cdadbd5feacac7409340b4
797.7 MB Download
md5:7c5d065ebd7233d882283b7574af83b4
1.1 GB Download
md5:00755e6ac749e423f1be45b13005414c
2.8 GB Download
md5:ba2f1b99eb8ab4c1749eb88a20cb86ba
1.3 GB Download
md5:66151bff28d5abc2e978ad8d8abd1222
6.1 GB Download
md5:de347d6b34ff6d42074485d33c3fb1d5
807.2 MB Download

Additional details

Software