Published June 6, 2026 | Version v2

Input Data for Galaxy tutorial "Batch Correction and Integration" - Seurat and Scanpy versions

Authors/Creators

Description

This data is used for the single-cell batch correction and integration tutorial on the Galaxy Training Network.

The input data was provided by Seurat in the 'Integrative Analysis in Seurat v5' tutorial. The input dataset provided here has been filtered to include only cells for which nFeature_RNA > 1000.  The SeuratObject dataset was converted to Anndata on Galaxy for use as an input for the Scanpy version of the tutorial.

The original dataset was published as: Ding, J., Adiconis, X., Simmons, S.K. et al. Systematic comparison of single-cell and single-nucleus RNA-sequencing methods. Nat Biotechnol 38, 737–746 (2020). https://doi.org/10.1038/s41587-020-0465-8.

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