nf-core
Published June 3, 2026 | Version 1.1.2
Software Open

nf-core/viralmetagenome: v1.1.2 - Blush Bunting

Authors/Creators

  • 1. @dholab
  • 2. Center for Medical Genetics Ghent
  • 3. @ScilifelabDataCentre

Description

v1.1.2 - 2026-06-03

Added

  • Add param --cluster_with_reference_pool to optionally include the reference pool in the clustering step (#278) (by @nrminor, @Joon-Klaps)
  • Template update to nf-core/tools v4.0.2 (#289) (by @Joon-Klaps)
  • Bump version from dev to 1.1.2 for release (#292) (by @Joon-Klaps)

Fixed

  • Cast Lazymaps to Hashmaps to become thread safe with various groovy operators (#291) (by @aersoares81, @Joon-Klaps)
  • Extract Python package versions via python -c "import X; print(X.__version__)" instead of pip show, so versions are recorded reliably across conda/pip layouts (#292) (by @Joon-Klaps)

Dependencies

| Dependency | Old version | New version | | ----------- | ----------- | ----------- | | nf-schema | 2.5.1 | 2.7.2 | | nft-utils | 0.0.3 | 1.0.0 |

Parameters

| Old parameter | New parameter | | ------------- | ------------------------------- | | | --cluster_with_reference_pool |

NB: Parameter has been updated if both old and new parameter information is present. NB: Parameter has been added if just the new parameter information is present.

Files

nf-core/viralmetagenome-1.1.2.zip

Files (9.9 MB)

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md5:d74d40a5a0fec840b579780d243a79bb
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/viralmetagenome/tree/1.1.2 (URL)

Software

Repository URL
https://github.com/nf-core/viralmetagenome