Spatial Transcriptomics of Human Colorectal Cancer: PTGS2 regulation of plasticity
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1.
University of Oxford
Description
This repository contains spatial transcriptomics datasets from five human colorectal cancer (CRC) tissue sections generated using the 10x Genomics Xenium platform.
CRC_human_epithelial_transcript_distance_matrix
Sample-specific parquet files containing epithelial cell transcript counts together with spatial distance measurements to PTGS2-positive fibroblasts.
CRC_human_xenium_muspan_domains
MuSpAn domain files (v1.2.5) derived from processed Xenium datasets of human colorectal cancer tissue sections. These files include cell type annotations and cell-level transcript counts for DACH1 and PTGS2.
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Additional details
Software
- Programming language
- Python