Software and data for "In-silico solute transport via perivascular networks in the human intracranial space"

The code used to run all simulations and postprocessing steps. Detailed instructions on how to install and run the software can be found in the following github repository:

https://github.com/MariusCausemann/brain-PVS-SAS-transport

The surface triangulations extracted from the segmentations in .ply format, suitable for viewing in e.g. paraview or further processing.

The mesh used to run all simulations in .xdmf format.

• standard.xdmf : complete mesh, including markers for parenchyma and CSF spaces.
• standard_outer.xdmf : only CSF spaces.
• *_facets.xdmf: respective boundary markers

1D representation of the arterial and venous networks, as well as the 3D cylinder corresponding to the vessel diameter. 

Synthseg segmentations of the T1 data and binary masks of venous and arterial networks from Hodneland et al.

Simulation results (concentration values in CSF, parenchyma and PVS) for the baseline model in the paper.

Interactive visualization of the tracer spreading for the baseline model in the paper. Also available here.

Animation of the tracer spreading for the baseline model in the paper.

Simulation results (concentration values in CSF, parenchyma and PVS) for the high PVS flow model in the paper.

Interactive visualization of the tracer spreading for the high PVS flow model in the paper. Also available here.

Animation of the tracer spreading for the high PVS flow model in the paper.