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Published May 28, 2026 | Version v0.1.1
Software Open

github.com/iwc-workflows/histological-staining-area-quantification/histological-staining-area-quantification

Authors/Creators

  • 1. University of Freiburg

Description

This workflow performs colour deconvolution and automated thresholding to quantify stained area in brightfield histological images (MT, IHC). It accepts whole slides or pre-cropped ROIs.

Files

github.com-iwc-workflows-histological-staining-area-quantification-histological-staining-area-quantification_v0.1.1.zip

Files (10.8 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20433205 (URL)
https://dockstore.org/workflows/github.com/iwc-workflows/histological-staining-area-quantification/histological-staining-area-quantification:v0.1.1 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhistological-staining-area-quantification%2Fhistological-staining-area-quantification/versions/v0.1.1/PLAIN-gxformat2/descriptor/histological-staining-area-quantification.ga (URL)