nf-core

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Published May 28, 2026 | Version 4.1.0
Software Open

nf-core/pixelator: nf-core/pixelator 4.1.0

Authors/Creators

  • 1. BioLizard
  • 2. @PixelgenTechnologies
  • 3. Working at Pixelgen Technologies
  • 4. Pixelgen Technologies
  • 5. Seqera
  • 6. NBIS

Description

[4.1.0] - 2026-05-28

Enhancements & fixes

  • Update pixelator container to 0.27.1 by @johandahlberg #212
  • Denoise graph before sample calling step by @Aratz #212
  • Add ACE and PLS denoising by @Aratz #212

Changed

  • K1 denoising is turned off by default by @Aratz #212

Software dependencies

| Dependency | Old version | New version | | ------------- | ----------- | ----------- | | pixelator | 0.26.0 | 0.27.1 | | pixelatorES | 0.10.1 | 0.10.4 |

Parameters

| Old parameter | New parameter | | ------------- | ----------------------------------- | | | --pna_denoise_run_ace_denoising | | | --pna_denoise_ace_k | | | --pna_denoise_run_pls_denoising | | | --pna_denoise_pls_score_threshold |

Files

nf-core/pixelator-4.1.0.zip

Files (526.1 kB)

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md5:642836e68cbb679a53ae2bf69f9d545c
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/pixelator/tree/4.1.0 (URL)

Software

Repository URL
https://github.com/nf-core/pixelator