Published May 19, 2026
| Version 4.0.63
Software
Open
github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDBPopulationScale
Authors/Creators
Description
A workflow that performs joint calling on single-sample gVCFs from GATK4 HaplotypeCaller using GenomicsDB. This Workflow relies on previously constructed genomicsDB instances to provide population-scale context for joint calling. NOTE: Currently assumes the interval list consists of only whole contigs.
Files
github.com-broadinstitute-long-read-pipelines-SRJointCallGVCFsWithGenomicsDBPopulationScale_4.0.63.zip
Files
(41.1 kB)
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md5:7b08c09584d6943d732f6c63ae83cf2c
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20289412 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDBPopulationScale:4.0.63 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Flong-read-pipelines%2FSRJointCallGVCFsWithGenomicsDBPopulationScale/versions/4.0.63/PLAIN-WDL/descriptor/SRJointCallGVCFsWithGenomicsDBPopulationScale.wdl (URL)