Published May 15, 2026
| Version SlideSeq_v3.6.6
Software
Open
github.com/broadinstitute/warp/scANVI
Authors/Creators
Description
Pipeline for cell type label transfer on Multiome data using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models.
Files
github.com-broadinstitute-warp-scANVI_SlideSeq_v3.6.6.zip
Files
(7.5 kB)
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md5:3e81bdc25bdb6afc6200d99c9b2e8f6c
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20222155 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/warp/scANVI:SlideSeq_v3.6.6 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2FscANVI/versions/SlideSeq_v3.6.6/PLAIN-WDL/descriptor/scANVI.wdl (URL)