Published May 15, 2026 | Version v1

VAPOR benchmark data, pretrained reward models, and ESM-2 logits cache for protein sequence optimization

Authors/Creators

Description

This dataset provides the benchmark data and pretrained assets used by
VAPOR, a Python toolkit for Pareto-leading protein sequence optimization
without invoking a protein language model during search.

The deposit contains three archives:

1. vapor_benchmark_data.tar.gz:
   Benchmark DMS datasets used for protein sequence optimization
   experiments, including core benchmarks and prepared ProteinGym
   landscapes.

2. vapor_pretrained_models.tar.gz:
   Pretrained reward model ensemble checkpoints used by VAPOR.

3. vapor_esm2_logits_cache.tar.gz:
   Cached ESM-2 per-position token logits used for offline PLM
   distillation. These caches avoid runtime PLM calls during sequence
   optimization.

These files are intended to be extracted into the VAPOR repository root
or release package directory before running the command-line interface.
The source code is available separately as part of the VAPOR software
package.

 

Files

Files (176.3 MB)

Name Size
md5:a879a9d690b1b274e8c1801c2808118f
14.4 MB Download
md5:151d53cd3a35ce67622e992c4117fcb2
100.2 MB Download
md5:168795abb191c6c3d8811b7a1de28972
61.7 MB Download

Additional details

Dates

Created
2026-05-15