Published March 30, 2017
| Version v1
Journal article
Open
DNA barcoding confirms the occurrence of Rhamdia branneri and Rhamdia voulezi (Siluriformes: Heptapteridae) in the Iguaçu River Basin
Authors/Creators
- 1. Laboratório de Biologia e Cultivo de Peixes de Água Doce, Universidade Federal de Santa Catarina, Rod. SC 403, 3532, 88066-260 Florianópolis, SC, Brazil. (JR) josianeribolli@gmail.com (corresponding author), (BMS) biascaranto@gmail.com, (EZF) evoy@lapad.ufsc.br
- 2. Campus Universitário, Centro de Ciências Biológicas, Departamento de Biologia Animal e Vegetal, Universidade Estadual de Londrina, Caixa postal 10011, 86057-970 Londrina, PR, Brazil. shibatta@uel.br
- 3. Grupo de Pesquisa em Química, Meio Ambiente e Aquicultura, Universidade Estadual do Oeste do Paraná. Caixa Postal 320, 85903-000 Toledo, PR, Brazil. rabombardelli@gmail.com
Description
Ribolli, Josiane, Scaranto, Bianca Maria, Shibatta, Oscar Akio, Bombardelli, Robie Allan, Zaniboni-Filho, Evoy (2017): DNA barcoding confirms the occurrence of Rhamdia branneri and Rhamdia voulezi (Siluriformes: Heptapteridae) in the Iguaçu River Basin. Neotropical Ichthyology 15 (1): e160147, DOI: 10.1590/1982-0224-20160147, URL: http://dx.doi.org/10.1590/1982-0224-20160147
Files
source.pdf
Files
(2.3 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:657e6e880d7f3ade44bd919a0b5616a8
|
2.3 MB | Preview Download |
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:657EFF880D7FFFDEFFBDFF9A0B56FFA8
References
- Abucarma M, Martins-Santos IC. Karyotype and B chromosome of Rhamdia species (Pisces, Pimelodidae) endemic in the River Iguacu basin. Cytologia. 2001; 66(3):299-306.
- Aljanabi SM, Martinez I. Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res. 1997; 25(22):4692-93.
- Baumgartner G, Pavanelli CS, Baumgartner D, Bifi AG, Debona T, Frana VA. Peixes do baixo rio Iguacu. Maringa: Eduem; 2012.
- Bellafronte E, Mariguela TC, Pereira LHG, Oliveira C, Moreira-Filho O. DNA barcoding of Parodontidae species from the La Plata river basin - applying new data to clarify taxonomic problems. Neotrop Ichthyol. 2013; 11(3):497-506.
- Belle SM, Nash CE. Better management practices for netpen aquaculture. In: Tucker CS, Hargreaves JA, editors. Environmental best management practices for aquaculture. Oxford: Wiley-Blackwell ; 2009. p. 261-330.
- Bouckaert R, Heled J, Kuhnert D, Vaughan T, Wu CH, Xie D et al. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput Biol. 2014; 10(4):e1003537.
- Collins RA, Boykin LM, Cruickshank RH, Armstrong KF. Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification. Methods Ecol Evol. 2012; 3 (3):457-65.
- Drummond AJ, Suchard MA, Xie D, Rambaut A. Bayesian phylogenetics with BEAUTi and the BEAST 1.7. Mol Biol Evol. 2012; 29(29):1969-73.
- Brown SD, Collins RA, Boyer S, Lefort MC, Malumbres-Olarte J, Vink CJ et al. SPIDER: an R package for the analysis of species identity and evolution, with particular reference to DNA barcoding. Mol Ecol Res. 2012; 12(3):562-65.
- Diaz J, Villanova GV, Brancolini F, Del Pazo F, Posner VM, Grimberg A et al. First DNA barcode reference library for the identification of South American freshwater fish from the lower Parana River. PloS ONE. 2016; 11(7):e0157419.
- Fujisawa T, Barraclough TG. Delimiting species using singlelocus data and the Generalized Mixed Yule Coalescent (GMYC) approach: a revised method and evaluation on simulated datasets. Syst Biol. 2013; 62(5):707-24.
- Garavello JC, Britski HA, Zawadzki CH. The cascudos of the genus Hypostomus Lacepede (Ostariophysi: Loricariidae) from the rio Iguacu basin. Neotrop Ichthyol. 2012; 10(2):263-83.
- Garavello JC, Shibatta OA. A new species of the genus Pimelodus La Cepede, 1803 from the rio Iguacu basin and a reappraisal of Pimelodus ortmanni Haseman, 1911 from the rio Parana system, Brazil (Ostariophysi: Siluriformes: Pimelodidae). Neotrop Ichthyol. 2007; 5(3):285-92.
- Garavello JC, Shibatta OA. Reappraisal of Rhamdia branneri Haseman, 1911 and R. voulezi Haseman, 1911 (Siluriformes: Heptapteridae) from the rio Iguacu with notes on their morphometry and karyotype. Neotrop Ichthyol. 2016; 14(1):e140111.
- Garcia C. Estudos cromossomicos e moleculares em Rhamdia (Pisces, Siluriformes, Heptapteridae): analise de relacoes evolutivas. [PhD Thesis]. Sao Paulo, SP: Instituto de Biociencias da Universidade de Sao Paulo; 2009.
- Garcia C, Moreira-Filho O, Bertollo LAC, Centofante L. B chromosomes and natural triploidy in Rhamdia sp. (Pisces, Siluriformes, Heptapteridae). Cytologia. 2003; 68(4):403-11.
- Garcia C, Oliveira C, Almeida-Toledo LF. Karyotypic evolution trends in Rhamdia quelen (Siluriformes, Heptapteridae) with considerations about the origin and differentiation of its supernumerary chromosomes. Genet Mol Res. 2010; 9(1):365-84.
- Gomes LC, Pessali TC, Sales NG, Pompeu PS, Carvalho DC. Integrative taxonomy detects cryptic and overlooked fish species in a neotropical river basin. Genetica. 2015; 143(5):581-88.
- Hammer O, Harper DAT, Ryan PD. PAST: Palaeontological Statistics Software Package for education and data analysis. Palaeontol Electron. 2001; 4(1):1-9.
- Haseman JD. Some new species of fishes from the rio Iguassu. Annals of the Carnegie Museum. 1911; 7:374-87.
- Hashimoto DT, Mendonca FF, Senhorini JA, Oliveira C, Foresti F, Porto-Foresti F. Molecular diagnostic methods for identifying Serrasalmid fish (Pacu, Pirapitinga, and Tambaqui) and their hybrids in the Brazilian aquaculture industry. Aquaculture. 2011; 321(1-2):49-53.
- Hashimoto DT, Prado FD, Foresti F, Porto-Foresti F. Molecular identification of intergenus crosses involving catfish hybrids: risks for aquaculture production.Neotrop Ichthyol.2016;14(2):e150139.
- Hebert PDN, Cywinska A, Ball SL, deWaard JR. Biological identifications through DNA barcodings. Proc R Soc B. 2003a; 270(1512):313-21.
- Hebert PDN, Ratnasingham S, de Waard JR. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc B. 2003b; 270(1):S96-S99.
- Jones M, Ghoorah A, Blaxter M. jMOTU and Taxonerator: turning DNA barcode sequences into annotated operational taxonomic units. PLoS ONE. 2011; 6(4):e19259.
- Lis JT. Fractionation of DNA fragments by polyethylene glycol induced precipitation. Methods Enzymol. 1980; 65(1):347-53.
- Machado CDB, Ishizuka TK, Freitas PDD, Valiati VH, Galetti Jr. PM. DNA barcoding reveals taxonomic uncertainty in Salminus (Characiformes). Syst Biodivers. 2016;1-11.
- Martinez JF, Lui RL, Blanco DR, Traldi JB, Silva LF, Venere PC et al. Comparative cytogenetics of three populations from the Rhamdia quelen species complex (Siluriformes, Heptapteridae) in two Brazilian hydrographic basins. Caryologia. 2011; 64(1):121-28.
- Melo BF, Ochoa LE, Vari P, Oliveira C. Cryptic species in the Neotropical fish genus Curimatopsis (Teleostei, Characiformes). Zool Scrip. 2016; 45(6):650-58.
- Meyer C, Paulay P. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol. 2005; 3(12):e422.
- Mise FT, Tencatt LFC, Souza F. Ecomorphological differences between Rhamdia (Bleeker, 1858) populations from the Iguacu River basin. Biota Neotrop. 2013; 13(4):99-104.
- Monaghan MT, Wild R, Elliot M, Fujisawa T, Balke M, Inward DJG et al. Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Syst Biol. 2009; 58(3):298-311.
- Moraes VPO, Cereali SS, Froehlich O, Dias AL. Cytogenetic characterization of Rhamdia quelen (Siluriformes, Heptapteridae) from the Bodoquena Plateau, Mato Grosso do Sul, Brazil. Genet Molec Res. 2007; 6(3):627-33.
- Pereira LHG, Maia GMG, Hanner R, Foresti F, Oliveira C. DNA barcodes discriminate freshwater fishes from the Paraiba do Sul River Basin, Sao Paulo, Brazil. Mitochondr DNA. 2011; 22(S1):71-79.
- Pereira LHG, Hanner R, Foresti F, Oliveira C. Can DNA barcoding accurately discriminate megadiverse Neotropical freshwater fish fauna? BMC Genetics. 2013; 14(20):1-14.
- Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, Hazell S et al. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst Biol. 2006; 55(4):595-609.
- Posada D. jModelTest: phylogenetic model averaging. Mol Biol Evol. 2008; 25(7):1253-56.
- Ramirez JL, Galetti Jr. PM. DNA barcode and evolutionary relationship within Laemolyta Cope 1872 (Characiformes: Anostomidae) through molecular analyses. Mol Phyl Evol. 2015; 93:77-82.
- Ratnasingham S, Hebert PDN. BOLD: the Barcode of Life Data System (www.barcodinglife.org). Mol Ecol Notes. 2007; 7:355-64.
- Rosso JJ, Mabragana E, Gonzalez Castro M, Diaz de Astarloa JM. DNA barcoding Neotropical fishes: recent advances from the Pampa Plain, Argentina. Mol Ecol Res. 2012; 12(6):999-1011.
- Shibatta AO, Garavello JC. Uma nova especie de Rhamdia Bleeker, 1858 (Siluriformes, Pimelodidae) do rio Iguacu. P. B4. In: Encontro Brasileiro de Ictiologia, 11, 1995, Campinas, SP, Resumos... Campinas, SP, PUC, SBI.; 1995.
- Shimabukuro-Dias CK, Costa Silva GJD, Ashikaga FY, Foresti F, Oliveira C. Molecular identification of the fish fauna from the pantanal flood plain area in Brazil. Mitochondr DNA A. 2016; 1-5.
- Silfvergrip AMC. A systematic revision of the Neotropical catfish genus Rhamdia (Teleostei, Pimelodidae). [PhD Thesis]. Stockholm, Stockholm University; 1996.
- Steinke D, Hanner R. The FISH-BOL collaborators protocol. Mitochondr DNA. 2011; 22(sup1):10-14.
- Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013; 30(12):2725-29.
- Ward RD, Hanner R, Hebert PDN. The campaign to DNA barcode all fishes, FISH-BOL. J Fish Biol. 2009; 74(2):329-56.
- Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN. DNA barcoding Australia's fish species. Phil Trans R Soc B. 2005; 360(1462):1847-57.