danforthcenter/plantcv: PlantCV v5.0.0rc1

What's Changed

• rename input to img in pcv.spectral_index.egi by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1793
• Remove time lapse switch to opencv headless by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1834
• Removed label param detect_color_card by @JalissaPirro in https://github.com/danforthcenter/plantcv/pull/1830
• Removed label parameter from auto_correct_color function by @Sam-Taylor-UIOWA in https://github.com/danforthcenter/plantcv/pull/1831
• Removed find_color_card by @marcusdgriff in https://github.com/danforthcenter/plantcv/pull/1832
• Use main opencv package headless build by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1835
• Remove label from report size marker area by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1829
• Add higher order auto_correct_color for non-linear by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1797
• Jupyter parallelization by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1803
• Add support for astrobotany color calibration stickers by @NMiklave in https://github.com/danforthcenter/plantcv/pull/1819
• Color correction scatterplot by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1759
• Boxpoints bug by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1871
• Parallel checkpointing by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1810
• Parallel verbosity by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1813
• Change to workflowconfig json attribute name by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1821
• Update algorithm to crop and unwarp card in detect_color_card by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1795
• Add GFP, RFP, APH support for read_cropreporter by @marcusdgriff in https://github.com/danforthcenter/plantcv/pull/1865
• Image sharpening by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1825
• Params verbosity by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1827
• Remove utils module by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1839
• Rename filepath to dir by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1840
• Process results in series by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1843
• Tuple to single value traits by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1846
• Exclude plot image by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1848
• Parallelization doc options simplification by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1849
• Camel case jupyterconfig by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1858
• Conserve pheno metadata by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1868
• Nested logs directories by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1873
• Parallel get env by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1874
• Updating color card detection method by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1879
• 1885 mask list to single labeled mask by @maliagehan in https://github.com/danforthcenter/plantcv/pull/1887
• 1862 import pam time files by @kmurphy61 in https://github.com/danforthcenter/plantcv/pull/1884
• 1862 chlorophyll image import by @kmurphy61 in https://github.com/danforthcenter/plantcv/pull/1894
• Handle checkpointed workflows that fail entirely by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1883
• Ignore hidden in parallel by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1897
• Additional spectral indices by @marcusdgriff in https://github.com/danforthcenter/plantcv/pull/1893
• Update link in supported color cards docs by @NMiklave in https://github.com/danforthcenter/plantcv/pull/1900
• 1902 skimage change min size by @k034b363 in https://github.com/danforthcenter/plantcv/pull/1904
• fix _find_closest in hyperspectral by @k034b363 in https://github.com/danforthcenter/plantcv/pull/1909
• Conda only on unix like by @joshqsumner in https://github.com/danforthcenter/plantcv/pull/1914

New Contributors

• @JalissaPirro made their first contribution in https://github.com/danforthcenter/plantcv/pull/1830
• @Sam-Taylor-UIOWA made their first contribution in https://github.com/danforthcenter/plantcv/pull/1831
• @marcusdgriff made their first contribution in https://github.com/danforthcenter/plantcv/pull/1832

Full Changelog: https://github.com/danforthcenter/plantcv/compare/v4.11...v5.0.0rc1