Published May 5, 2026
| Version v1.0.0
Software
Open
github.com/yuhanhsu/wf-genoppi-saintexp/genoppi-saintexp
Authors/Creators
Description
wf-genoppi-saintexp
Files for running Genoppi and SAINTexpress IP-MS analysis workflow on Terra
- R scripts (runGenoppi.r, runSAINTexpressInt.r, runSAINTexpressSpc.r) to run analysis
- Dockerfile to containerize the R scripts and install dependencies
- cloudbuild.yaml to build and push docker image to Google Artifact Registry via Cloud Build
- genoppi-saintexp.wdl to define the workflow to be run using the docker image
- .dockstore.yml to sync workflow WDL to Dockstore
Approximate run time
- Cloud Build: ~15 minutes
- Dockstore: a few minutes
- Terra workflow: ~5 minutes
Files
github.com-yuhanhsu-wf-genoppi-saintexp-genoppi-saintexp_v1.0.0.zip
Files
(1.2 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:eb8f2353513c6db96ee96e2403ac7be4
|
1.2 kB | Preview Download |
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20043976 (URL)
- https://dockstore.org/workflows/github.com/yuhanhsu/wf-genoppi-saintexp/genoppi-saintexp:v1.0.0 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fyuhanhsu%2Fwf-genoppi-saintexp%2Fgenoppi-saintexp/versions/v1.0.0/PLAIN-WDL/descriptor/genoppi-saintexp.wdl (URL)