Published May 5, 2026 | Version 1.0.0

Real-world validation dataset for the Transducin open-source pipeline (github.com/oftalmos-org/transducin, Apache 2.0).

  • 1. Oftalmos.org — Retina and Vitreous Practice, Hospital Ángeles Chihuahua, México
  • 1. Central Retina, Hospital Tec 100 / H+, Santiago de Querétaro, Qro., México
  • 2. Oftalmos.ORG

Description

Real-world validation dataset for the Transducin open-source pipeline (github.com/oftalmos-org/transducin, Apache 2.0).

 

 

Contains one Optopol Revo FC130 .OPT macular scan (SOCT software v21.1.2, acquired 2026-02-26) from the corresponding author, provided under explicit consent for scientific reproducibility. The file demonstrates the complete Transducin pipeline: binary .OPT parsing, DICOM OphthalmicTomographyImageStorage generation, and TID 1500 Structured Report with SNOMED-CT coded measurements (CMT = 292.998 µm, ETDRS 9-sector grid, mRNFL, mGCIPL). PatientID and demographic tags have been removed from the derived DICOM outputs committed to the repository. The full DICOM output  including all clinical measurements can be reproduced by running:

 

  python -m transducin.revo_opt_reader \
    JAHJ19870831_macular_OD.opt -o output/

 

Published in: Jaurrieta Hinojos JN et al. Transducin: An Open-Source Python Pipeline for Parsing the Undocumented Optopol Revo FC130 .OPT Format and Generating DICOM Structured Reports. medRxiv 2026. https://doi.org/10.64898/2026.07.14.26357256




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Additional details

Related works

Is described by
Preprint: 10.64898/2026.07.14.26357256 (DOI)
Is supplement to
Software: https://github.com/oftalmos-org/transducin (URL)

Dates

Submitted
2026-05-05

Software

Repository URL
https://github.com/oftalmos-org/transducin
Programming language
Python
Development Status
Active

Audiovisual core

Capture device
Optopol Revo FC130