Published May 1, 2026
| Version v1
Publication
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Data accompanying manuscript: A 3D genome atlas of human tonsil and the role of loop extrusion in B cell somatic hypermutation
Description
This repository contains the analyzed datasets, codes, uncut gel pictures of western blots, and plasmid maps for the manuscript "A 3D genome atlas of human tonsil and the role of loop extrusion in B cell somatic hypermutation". Analyzed Droplet Hi-C datasets are stored in the folder "DropletHiC_analyzed_data"; Analyzed 3C-HTGTS, CUT&RUN, ChIP-seq and TT-TimeLapse-seq datasets are stored in the folder "Sequencing_analyzed_bigWig_data"; Analyzed MINA and chromatin tracing datasets are stored in the folder "Imaging_analyzed_data"; codes for Droplet Hi-C and imaging data analysis are stored in the folder "Codes". The plasmid maps are stored in the folder "PlasmidMap".
Files
Codes.zip
Files
(69.3 GB)
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md5:8693fef1eff60b729ecfa21c49f6a6ef
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md5:fcf183e34211f428903cd93202371097
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58.0 GB | Preview Download |
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md5:abc999e01d060241a63b794a8809e998
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2.6 GB | Preview Download |
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md5:dad6df02cea62bcbb882301ec5bb4a7e
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52.1 kB | Preview Download |
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md5:60c9417e6706fd096e1098f8d7f5d8e2
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4.7 GB | Preview Download |
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md5:bb5b620eb7b74cdd76ecafdfb75bdcfc
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12.0 MB | Preview Download |
Additional details
Funding
- National Institutes of Health
- Genome Architecture in Human Germinal Center B Cell Development, Malignancy, and Somatic Hypermutation U01CA260701
Dates
- Submitted
-
2026-05-01