Published April 29, 2026
| Version 1.1
Software
Open
Building computational benchmarks: an Omnibenchmark reimplementation of a single-cell preprocessing pipeline evaluation
Authors/Creators
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1.
University of Zurich
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2.
SIB Swiss Institute of Bioinformatics
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3.
ETH Zurich
Description
We benchmark five single-cell RNAseq preprocessing pipelines across three datasets and study their clustering accuracy under different metrics. The repo contains a snapshot of the benchmarking artefacts produced using the Omnibenchmark framework.
Files
Files
(15.0 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:e20a92f4e401921c867f2f8442591291
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152.9 MB | Download |
|
md5:853f968290a54e13eae0e1d9711cdf90
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14.8 GB | Download |
Additional details
Related works
- Is supplement to
- Preprint: 10.64898/2026.05.01.722166 (DOI)
Dates
- Created
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2026-03-03
- Updated
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2026-04-29
Software
- Repository URL
- https://github.com/scrna-bench/pipelines-plan
- Programming language
- Python , R
- Development Status
- Active