zqfang/GSEApy: gseapy-v1.2.0

Published April 26, 2026 | Version v1.2.0

Software Open

What's Changed

Use importlib.metadata for version lookup in CLI entrypoint by @Copilot in https://github.com/zqfang/GSEApy/pull/332
add organism keyword to GSEA, Prerank, GSEA, ssGSEA by @zqfang in https://github.com/zqfang/GSEApy/pull/331
Fix DotPlot dot area scaling to be linear with Hits_ratio by @Copilot in https://github.com/zqfang/GSEApy/pull/336
Fix FDR computation to be scoped per gene set library instead of globally by @Copilot in https://github.com/zqfang/GSEApy/pull/335
Fix signal_to_noise metric: apply GeneCluster sigma correction to match GSEA reference implementation by @Copilot in https://github.com/zqfang/GSEApy/pull/337
Fix non-reproducible prerank NES/FDR results across installations by @Copilot in https://github.com/zqfang/GSEApy/pull/338
Replace zero permutation p-values with minimum detectable value (1/n_perm) by @Copilot in https://github.com/zqfang/GSEApy/pull/342
Add GO term level filtering via standalone GOFilter class by @Copilot in https://github.com/zqfang/GSEApy/pull/340
Modernize build & dev environment with uv by @zqfang in https://github.com/zqfang/GSEApy/pull/343
Add fgsea multilevel p-value algorithm to GSEApy Rust backend by @Copilot in https://github.com/zqfang/GSEApy/pull/349
Update pyo3 to 0.28 and fix FromPyObject deprecations by @Copilot in https://github.com/zqfang/GSEApy/pull/348
Fix TypeError in download_library when server response has no charset encoding by @Copilot in https://github.com/zqfang/GSEApy/pull/354

Full Changelog: https://github.com/zqfang/GSEApy/compare/v1.1.13...v1.2.0

Name	Size	Download all
zqfang/GSEApy-v1.2.0.zip md5:a5e02b2b00a25dc378b58a70467cf043	61.4 MB	Preview Download

Is supplement to: Software: https://github.com/zqfang/GSEApy/tree/v1.2.0 (URL)