Published May 21, 2026
| Version v5
Dataset
Open
D3-DNA: Data and Model Weights for DNA Discrete Diffusion
Description
Data files and pretrained model weights for D3: DNA Discrete Diffusion, a discrete diffusion framework for conditional generation of DNA regulatory sequences.
V2 additions: Adds D3_Conv_DeepSTARR.pth and D3_Conv_MPRA_HepG2.pth (SEDD-format convolutional backbones; d3_dna.io.load_checkpoint handles both .ckpt and .pth). README updated.
V4 additions: Adds Oracle_promoter.sei.names feature mask necessary to run inference with Oracle_Promoter.pth.tar README updated.
V5 additions: Adds the tabulated sequence + RNA/DNA counts for the wet lab validation assays.
Package: https://github.com/anirbansarkar-cs/d3-dna
Research code: https://github.com/anirbansarkar-cs/D3-DNA-Discrete-Diffusion
Files
d3_wet_lab_validation_results.csv
Files
(17.0 GB)
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md5:d1243fb01ed24b69a3643a03ff9b6680
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md5:c4c74a36daa44e63b4a616568e1995b4
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201.9 MB | Download |
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md5:fb883c4f3114dc6b4757c546d9642a44
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1.5 GB | Download |
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1.5 GB | Download |
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md5:e282c76933471a005f4ab821053ce4ee
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1.5 GB | Download |
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1.5 GB | Download |
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md5:f275468bfb5f36bde3cd8a2fa0168834
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4.0 MB | Preview Download |
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294.6 MB | Download |
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md5:b37762d49dac75e4036c02398b468c8b
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970.7 MB | Download |
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md5:da0df7173e2e00aad4e37c8995af7ee4
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1.6 GB | Download |
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md5:ebd9ff5a884a30cc63ae645856063e76
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246.0 MB | Download |
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7.5 MB | Download |
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md5:37ca20c28d8f99ac72401f784bf0869c
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16.0 MB | Download |
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md5:1b7b52d9416bb88d4eb8f5740b8d1d6f
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16.0 MB | Download |
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md5:e43843b40c904956f39fc6edd48055ac
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7.1 GB | Download |
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md5:7e8d8bc124b4d23e6b52ddb957ce0614
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905.5 kB | Download |
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md5:6eb42802feb2d429ec7658331cbb7a83
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4.1 kB | Preview Download |