AstrobioMike/bit: v1.16.0

Added

• setup for argcomplete during conda install for commands with subcommands
• added flag --skip-read-pids to bit-cov-stats so user can save time if they don't want that info
• added coverage options to bit-gen-reads for easier generation of desired coverages than the read-proportions method previously allowed

Changed

• removed bit-gff-to-anvio, that is now just stored as a gist here: https://gist.github.com/AstrobioMike/45e10adb3eaceb338a7eb10f49038355
• removed bit-split-multifasta, that is now just stored as a gist here: https://gist.github.com/AstrobioMike/28cae086241bc0d68e05c215acd91a69
• bit-get-cov-stats
  • now just bit-cov-stats (due to popular demand)
  • output *-per-ref.tsv now includes "length" and "num_contigs" columns
• bit-cov-analyzer
  • added "contig_length" column to output tsvs
• bit-gen-reads
  • -c changed to --coverage and now -C is for --circularize