QSIRecon: Reconstruction of preprocessed q-space images (dMRI)

Published April 20, 2026 | Version 26.0.0

Software Open

1. Department of Neuropsychiatry, University of Pennsylvania
2. Beckman Institute for Advanced Science & Technology, University of Illinois at Urbana-Champaign, IL, USA
3. Perelman School of Medicine, University of Pennsylvania, PA, USA
4. Department of Psychiatry, University of Pittsburgh Medical Center
5. Department of Bioengineering, University of Pennsylvania
6. Turing Medical
7. Max Planck Institute for Human Development, Berlin, Germany
8. Brigham and Women's Hospital, Mass General Brigham/Harvard Medical School
9. Department of Psychology, University of Oslo
10. Harvard-MIT Program in Speech and Hearing Bioscience and Technology
11. Center for Innovation in Brain Science, University of Arizona
12. Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, Jülich, Germany
13. Johns Hopkins Bloomberg School of Public Health
14. University of Pennsylvania
15. Perelman School of Medicine, University of Pennsylvania

What's Changed

Bring packaging in line with NiPreps and adopt BIDS atlas organization by @tsalo in https://github.com/PennLINC/qsirecon/pull/367

Allow schemes to be classified as "unknown" by @tsalo in https://github.com/PennLINC/qsirecon/pull/364
Replace np.complex with complex by @tsalo in https://github.com/PennLINC/qsirecon/pull/372
Change shutil.copy to shutil.copyfile by @tsalo in https://github.com/PennLINC/qsirecon/pull/373
Make --recon-spec a required argument by @tsalo in https://github.com/PennLINC/qsirecon/pull/375

Migrate from flake8 + black + isort to ruff by @tsalo in https://github.com/PennLINC/qsirecon/pull/351
Address easy style issues by @tsalo in https://github.com/PennLINC/qsirecon/pull/352
Fix version string issue by @tsalo in https://github.com/PennLINC/qsirecon/pull/355
Add tox, pre-commit config, and dependabot by @tsalo in https://github.com/PennLINC/qsirecon/pull/353
Address Sphinx build issues by @tsalo in https://github.com/PennLINC/qsirecon/pull/366
Remove undefined FSFAST_HOME variable by @tsalo in https://github.com/PennLINC/qsirecon/pull/376

Full Changelog: https://github.com/PennLINC/qsirecon/compare/1.2.0...26.0.0

If you use this software, please cite it using the following metadata.

Name	Size	Download all
PennLINC/qsirecon-26.0.0.zip md5:473657b247d26d171a94e153ed0dc6bd	13.4 MB	Preview Download

Is supplement to: Software: https://github.com/PennLINC/qsirecon/tree/26.0.0 (URL)