CCR Collaborative Bioinformatics Resource [CCBR]
Published April 17, 2026 | Version v0.6.0
Software Open

CHAMPAGNE: CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

Authors/Creators

  • 1. Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA

Description

  • Support uncompressed fastq files -- they will be gzipped after the samplesheet check. (#306, @kelly-sovacool)
  • Add configurable correlation method parameter for deeptools plotCorrelation. (#307, @kelly-sovacool)
    • Users can now set --deeptools_corr_method to pearson or spearman (default).
  • Add workflow diagram to the documentation. (#309, @JWrows2014, @kelly-sovacool)
  • Add an intro and description of the workflow steps to the docs. (#310, @kelly-sovacool)
  • Output deduplicated tagalign files to results/align/tagalign/. (#313, @kelly-sovacool)

Notes

Please cite CHAMPAGNE as below.

Files

CCBR/CHAMPAGNE-v0.6.0.zip

Files (4.7 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/CCBR/CHAMPAGNE/tree/v0.6.0 (URL)

Software

Repository URL
https://github.com/CCBR/CHAMPAGNE