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Published April 17, 2026 | Version scANVI_develop
Software Open

github.com/broadinstitute/warp/scANVI

Authors/Creators

Description

Pipeline for cell type label transfer on Multiome data using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models.

Files

github.com-broadinstitute-warp-scANVI_scANVI_develop.zip

Files (7.2 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.19631700 (URL)
https://dockstore.org/workflows/github.com/broadinstitute/warp/scANVI:scANVI_develop (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2FscANVI/versions/scANVI_develop/PLAIN-WDL/descriptor/scANVI.wdl (URL)