Semi-supervised Omics Factor Analysis (SOFA) Python package

This repository contains a frozen version of the SOFA package (https://github.com/tcapraz/SOFA) that was used to perform the analyses and generate the figures of our preprint Semi-supervised Omics Factor Analysis (SOFA) disentangles known and latent sources of variation in multi-omic data: https://doi.org/10.1101/2024.10.10.617527.

The data to recapitulate the analyses can be found at this Zenodo repository: https://zenodo.org/records/14761127