Published April 13, 2026
| Version v1
Dataset
Open
HipSTR-derived genome-wide STR genotypes from HGDP and SGDP high-coverage WGS data
Authors/Creators
Description
This dataset contains genome-wide Short Tandem Repeat (STR) genotypes derived from high-coverage whole-genome sequencing (WGS) data from the Human Genome Diversity Project (HGDP) and the Simons Genome Diversity Project (SGDP). The STR genotype calling was performed using the HipSTR algorithm on CRAM/BAM files retrieved from the International Genome Sample Resource (IGSR). Full details of the bioinformatic pipeline and quality control measures are described in the associated manuscript (see Related Identifiers).
Data Content
- Format: VCF
- Samples: 828 individuals from HGDP and 276 individuals from SGDP.
- Reference Genome: GRCh38
Files
Files
(10.7 GB)
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Additional details
Related works
- Is described by
- Preprint: 10.64898/2026.02.20.707006 (DOI)
References
- Bergström, A. et al. Insights into human genetic variation and population history from 929 diverse genomes. Science 367, eaay5012 (2020).
- Mallick, S. et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature 538, 201–206 (2016).
- Fairley, S., Lowy-Gallego, E., Perry, E. & Flicek, P. The International Genome Sample Resource (IGSR) collection of open human genomic variation resources. Nucleic Acids Research 48, D941–D947 (2020).
- Willems, T. et al. Genome-wide profiling of heritable and de novo STR variations. Nature methods 14, 590–592 (2017).