Published April 9, 2026 | Version v1
Preprint Open

SpikeInterface-GUI: efficient and versatile spike sorting visualization and curation

  • 1. CNRS Délégation Rhône-Auvergne
  • 2. ROR icon University of Edinburgh
  • 3. ROR icon Allen Institute

Description

Extracellular electrophysiology is a key technique in neuroscience, but the scale and diversity of the produced data make it difficult to visualize. Additionally the rapid development of new spike sorting algorithms creates a significant challenge for researchers trying to assess and compare these tools. In this paper we introduce SpikeInterface-GUI, a flexible visualization tool tightly integrated with SpikeInterface, designed to display raw ephys data and information about spike sorted units. Researchers can utilize the GUI to curate output by labeling, merging and splitting units, and use a plugin system to create their own bespoke data visualizations. There are two backends, including a web-based backend designed to support deployment on a web-server or centralized workstation. When set up, this allows global collaborations to easily share and compare results on a web browser without having to install any software.

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spikeinterface_gui_manuscript.pdf

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Additional details

Funding

Biotechnology and Biological Sciences Research Council
Enhancing automated, reproducible analysis workflows and data curation for extracellular neural recordings with SpikeInterface BB/X01861X/1

Software