Published April 7, 2026
| Version v0.18
Software
Open
github.com/iwc-workflows/cutandrun/main
Description
Complete CUT&RUN/CUT&TAG analysis workflow for paired-end sequencing data. Processes raw FASTQ files through adapter removal (cutadapt) and alignment (Bowtie2 with dovetail option enabled). Applies quality filtering (MAPQ ≥ 30, concordant pairs only), converts BAM to BED format, and performs peak calling using MACS2 with parameters optimized for the punctate signal profile characteristic of CUT&RUN/CUT&TAG experiments.
Files
github.com-iwc-workflows-cutandrun-main_v0.18.zip
Files
(7.4 kB)
| Name | Size | Download all |
|---|---|---|
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md5:5e5f5e28265c842a146d6250c2c2a555
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7.4 kB | Preview Download |
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.19457446 (URL)
- https://dockstore.org/workflows/github.com/iwc-workflows/cutandrun/main:v0.18 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/versions/v0.18/PLAIN-gxformat2/descriptor/cutandrun.ga (URL)