Dockstore
Published July 2, 2026 | Version scANVI_v2.0.0
Software Open

github.com/broadinstitute/warp/SlideSeq

Authors/Creators

Description

Processes Slide-seq bead data: aligns reads with STARsolo, computes cell/gene/UMI metrics, and produces a sparse count matrix and h5ad output file

Files

github.com-broadinstitute-warp-SlideSeq_scANVI_v2.0.0.zip

Files (28.1 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.21144958 (URL)
https://dockstore.org/workflows/github.com/broadinstitute/warp/SlideSeq:scANVI_v2.0.0 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2FSlideSeq/versions/scANVI_v2.0.0/PLAIN-WDL/descriptor/SlideSeq.wdl (URL)