Published April 3, 2026 | Version v1

LumbarSR: A Paired Clinical CT and Photon-Counting Micro-CT Dataset for Human Lumbar Vertebrae

  • 1. Institute of Diagnostic and Interventional Radiology

Contributors

Annotator:

Data collector:

Data manager:

  • 1. ROR icon Shanghai Jiao Tong University
  • 2. Institute of Diagnostic and Interventional Radiology, Shanghai Jiao Tong University Affiliated Sixth People's Hospital

Description

LumbarSR is a paired clinical CT and photon-counting micro-CT dataset for human lumbar vertebrae, designed to support super-resolution, cross-resolution comparison, and trabecular bone analysis in musculoskeletal imaging.

The dataset contains 30 paired human dry lumbar vertebral specimens scanned with both clinical helical CT and Micro-PCCT. Clinical CT data were acquired under eight configurations formed by the combination of two in-plane resolutions (195 um and 586 um), two slice thicknesses (500 um and 1000 um), and two reconstruction kernels (bone and soft tissue). The corresponding Micro-PCCT reference volumes are provided at 105 um isotropic resolution.

This release includes:
- original DICOM data for advanced users who wish to process the data from scratch
- registered NIfTI volumes aligned to the Micro-PCCT reference space
- released BoneMask ROI volumes aligned to the registered data
- dataset documentation and public benchmark resources through the associated repository and project website

The released data support research on CT super-resolution, multi-resolution fusion, kernel-aware reconstruction, and downstream trabecular bone morphometry. The public repository also provides registration baselines, super-resolution baselines, evaluation scripts, and benchmark documentation.

Recommended resources:
- GitHub repository: https://github.com/FrankZhangRp/LumbarSR-Challenge 
- Project website: https://frankzhangrp.github.io/LumbarSR-Challenge/

Archive contents:
- `lumbarSR.zip` together with split parts `lumbarSR.z01`-`lumbarSR.z06` contains the main dataset archive
- `BoneMask.zip` contains the released BoneMask ROI package

For training and development, the public documentation currently recommends using `Lumbar_01`-`Lumbar_25` for development and `Lumbar_26`-`Lumbar_30` as the released reference test subset.

If you use this dataset, please also cite the associated repository and project website listed above.

Files

BoneMask.zip

Files (26.8 GB)

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