Published April 3, 2026
| Version v3.0.11.0
Software
Open
broadinstitute/viral-pipelines: v3.0.11.0
Authors/Creators
- 1. Broad Institute
- 2. MIT
- 3. Merck
- 4. DynoTx
- 5. Novo Nordisk
- 6. Contractor at The Broad Institute
Description
What's Changed
- bump viral-ngs to 3.0.9 by @dpark01 in https://github.com/broadinstitute/viral-pipelines/pull/649
- bump viral-ngs 3.0.10, remove GATK IndelRealigner deps, update lofreq pipeline by @dpark01 in https://github.com/broadinstitute/viral-pipelines/pull/650
- fix tar_extract: switch LOCAL to HDD disk, bump cpu and preemptible by @dpark01 in https://github.com/broadinstitute/viral-pipelines/pull/651
- Bump docker image versions for ncbi-tools, nextclade, read-qc-tools, pangolin by @dpark01 in https://github.com/broadinstitute/viral-pipelines/pull/652
- Adjust preemptible settings for assembly/metagenomics tasks by @dpark01 in https://github.com/broadinstitute/viral-pipelines/pull/654
- Add rasusa-based coverage downsampling and tune preemptible settings by @dpark01 in https://github.com/broadinstitute/viral-pipelines/pull/655
Full Changelog: https://github.com/broadinstitute/viral-pipelines/compare/v3.0.8.0...v3.0.11.0
Files
broadinstitute/viral-pipelines-v3.0.11.0.zip
Files
(81.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:6e702b730b1cda3b72ff18651a610755
|
81.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/broadinstitute/viral-pipelines/tree/v3.0.11.0 (URL)
Software
- Repository URL
- https://github.com/broadinstitute/viral-pipelines