McRae-Lab/modified_rna_bases: v0.1-modified-RNA-bases

Herein lay vibe-coded scripts for semi-automating processes in building RNA PDB models — use at your own peril.

These three scripts modify canonical RNA bases in .pdb structures to their modified analogs, preserving geometry.

Each script uses Biopython to modify atom coordinates and naming directly in the PDB file. They do not rebuild bonds or hydrogens—those are added later by Phenix ReadySet and geometry minimization.