nf-core/viralmetagenome: v1.1.1 - Azure Albatross

Added

• Template update for nf-core/tools v3.5.2 (#270) (by @Joon-Klaps)
• Modules update to latest nf-core versions (#271) (by @Joon-Klaps)
• Update local modules to use topics (#272) (by @Joon-Klaps)
• Add better output file descriptions for prokka #274 (by @Joon-Klaps)
• Better item descriptors (it -> [it[0], it[1] to meta, fasta , _foo -> [meta,fasta]) for better readability (#265) (by @Joon-Klaps)
• Include the new parameter --transpose_overview_tables , fixes #220 (#275) (by @Joon-Klaps)
• Bump version from dev to 1.1.1 for release (#277) (by @Joon-Klaps)

Fixed

• Follow the rules of strict syntax health #265 (by @Joon-Klaps)
• Moved the module specifics from base.config to modules.config (#265)
• Fix bug from regex in input schema still allowing underscores in sample and group names (#269) - (by @Joon-Klaps)

Dependencies

| Dependency | Old version | New version | | ---------- | ----------- | ----------- | | snpeff | 5.3.0a | 5.4.0a |

Parameters

| Old parameter | New parameter | | ------------- | ----------------------------- | | | --transpose_overview_tables |

NB: Parameter has been updated if both old and new parameter information is present. NB: Parameter has been added if just the new parameter information is present.