Published March 30, 2026
| Version v1
Dataset
Open
Plumbom et al. 2026
Authors/Creators
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1.
Berlin Institute of Health at Charité - Universitätsmedizin Berlin
Contributors
Contact person:
-
1.
Berlin Institute of Health at Charité - Universitätsmedizin Berlin
Description
Processed data for Plumbom et al. "circVDJ-seq for T cell clonotype detection in single-cell and spatial multi-omics"
- annotation: contains meta-data for different single-cell datasets
- cellranger_count: contains count matrices (h5 objects)
- cellranger_vdj: contains `cellranger vdj` output (metrics_summary.csv and filtered_contig_annotations.csv)
- dandelion: contains results of re-processing of cellranger vdj output with dandelion
- mixcr: contains circVDJ-seq and spatialVDJ processing results using MiXCR
- objects: contains processed Seurat objects for lymph node Visium data
- spaceranger: contains spaceranger output for neuroblastoma and lung visium runs
- trust: contains circVDJ-seq and MAS-ISO-seq processing results using TRUST4
Files
circVDJseq_data.zip
Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2025.09.16.675546 (DOI)