Baktfold Manuscript Supplementary Files Too Large For Github

Contains all supplementary files that go with the `baktfold-analysis` repository (https://github.com/gbouras13/baktfold-analysis) that are too large for GitHub.

File list:

• baktfold-benchmark.tar.gz - Bakta manuscript benchmark genomes - relevantly, contains genbank and mag dataset genomes
• combined_plasmid_annotations.tsv.gz - IMG/PR annotations for Bakta + Baktfold
• all_chunks_with_go.tsv.gz - all GlobDB per protein Baktfold annotations with mapped GO Terms for all Swiss-Prot hits
• protist_baktfold_jsons.tar - all Ensembl protists Baktfold JSON annotation files
• smag_combined_baktfold_with_eggnog.tsv.gz - SMAG dataset protein eggnog-Mapper (from original Delmont et al publication) + baktfold annotations
• updated_arc_protein.trimmed.faa.gz - 1,993,306 custom archaeal protein database raw FASTA
• updated_arc_protein.headers.tsv.gz - 1,993,306 custom archaeal protein database 2 column TSV for use with baktfold's custom DB  --custom-annotations parameter
• updated_arc_protein.trimmed.fs.db.tar.gz - 1,993,306 custom archaeal protein database Foldseek database for use with --custom-db
• genbank_predictions_esm.tar  genbank_hypotheticals_structures.tar mag_predictions_esm.tar mag_hypotheticals_structures.tar - ESMFold and ColabFold predictions for hypothetical proteins for mag and genbank benchmarking datasets