Published March 25, 2026 | Version v3
Project deliverable Open

PlanktonFlow : hands-on, deep-learning classification of plankton images for biologists - Supplementary information & Best model weight

Description

This archive provides supplementary information and trained model weights for the paper “PlanktonFlow: Hands-on Deep Learning Classification of Plankton Images for Biologists”.

It contains:

  • A supplementary document describing implementation details not included in the main text, such as loss function algorithms, learning rate scheduling, and early stopping strategies and figurer illustrating additional results.

  • The best trained model weights obtained during the experiments.

  • Code to reproduce the figures and results from the paper.

These materials are intended for readers who wish to examine the methodological details of the study or to run inference and compare model performance with the reported metrics. They are not required to train new models using the PlanktonFlow pipeline, but they provide a deeper look into the implementation and the final trained model.

For training new models or adapting the approach, please refer to the primary dataset and the open-source pipeline available on GitHub.

Files

PlanktonFlow - Code for figures and results.zip

Files (111.3 MB)

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md5:1b58f3cb97325e685fc1e5e634e9a50d
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md5:ba8acf884669cdd25f1cdb5cae43a6a8
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md5:7ff3f3ec079bef0e5a1f1d2580c3fc15
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Additional details

Related works

Is cited by
Publication: 10.1101/2025.09.19.677346 (DOI)
Is derived from
Dataset: 10.5281/zenodo.16840846 (DOI)

Software

Repository URL
https://github.com/ziraax/PlanktonFlow
Programming language
Python
Development Status
Active