Neurosim-lab/netpyne: v0.6.4

Added analysis.nTE() function to calculate normalized transfer entropy (issue #42)

Added analysis.granger() function to calculate and plot Spectral Granger Causality (issue #42)

Added analysis.plotRatePSD() to plot firing rate power spectral density

Added analysis.plotShape() to plot 3D morphology of cell and synapse locations

Added option to fix soma depth for subcellular distributions based on 1d and 2d maps

Added support for gap junction (electrical synapse) connections

Improved import of multicompartmental cells from NeuroML2

Added option to turn off graphics by adding -nogui from command line

Added option to skip batch sims if output file already exists

Added option to overlay pop labels and show avg rates to plotRaster() (issue #111)

All section now include argument cell=self to differentiate them

Fixed travis script so checks all tuts and examples after each commit (issue #37)

Fixed bug positioning cells with 3d geom

Fixed bug in sim.clearAll by closing all figures instead of current (issue #168)

Fixed bug: cache_efficient was not being turned on

Fixed bug setting simConfig loaded from file

Fixed bug in plotRaster inverseOrder option

Fixed str vs basestring in analysis.py and simFuncs.py

Fixed bug due to not inserting ions in section