Published March 23, 2026 | Version v1
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Caridina tashanica sp. nov., a new cave shrimp species (Decapoda, Atyidae) from sulphidic water in southwestern Iran

  • 1. University of Primorska, Koper, Slovenia
  • 2. Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia|Université libre de Bruxelles (ULB), Brussels, Belgium
  • 3. Iranian National Institute for Oceanography and Atmospheric Science, Tehran, Iran
  • 4. Université libre de Bruxelles (ULB), Brussels, Belgium|Interuniversity Institute of Bioinformatics in Brussels – (IB)2, Brussels, Belgium|Brussels Laboratory of the Universe – BLU, Brussels, Belgium
  • 5. Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia|Department of Organisms and Ecosystems Research, National Institute of Biology, Ljubljana, Slovenia
  • 6. University of Ljubljana, Ljubljana, Slovenia

Description

A new cave species of atyid shrimp of the genus Caridina H. Milne Edwards, 1837 was discovered during a survey of a subterranean habitat in southwestern Iran (Khuzestan Province, Tashan Cave). This is the first record of a cave atyid shrimp in Iran and the first documented occurrence of a Caridina species inhabiting sulphidic groundwater. Phylogenetic analyses and genetic distances support the status of Caridina tashanica sp. nov. as a distinct species, closely related to C. shahrazadae. Morphologically, the new species is characterised by reduced eyes and pigmentation, and by an extremely elongated rostrum with numerous teeth. Males have specific, triangular endopodite of pleopod I, and a rod-like appendix masculina of pleopod II with numerous long setae. Ovigerous females lay relatively large, oval, white eggs, which clearly indicate a landlocked life cycle. This study contributes to the knowledge of atyid shrimps in the Middle East and to the subterranean biodiversity of the sulphidic Tashan Cave ecosystem in Iran.

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References

  • Arudpragasam HH, Costa HH (1962) Atyidae of Ceylon: I. Crustaceana 4: 7–24. https://doi.org/10.1163/156854062x00021
  • Brad T, Iepure S, Sarbu S (2021) The chemoautotrophically based Movile cave groundwater ecosystem, a hotspot of subterranean biodiversity. Diversity 13: 1–13. https://doi.org/10.3390/d13030128
  • Cai Y, Ng LKP (2018) Freshwater shrimps from karst caves of southern China, with descriptions of seven new species and the identity of Typhlocaridina linyunensis Li and Luo, 2001 (Crustacea: Decapoda: Caridea). Zoological studies 27: 1–33. https://doi.org/10.6620/ZS.2018.57-27
  • Calman WT (1926) On freshwater prawns of the family Atyidae from Queensland. The Annals and Magazine of Natural History 17: 241–246. https://doi.org/10.1080/00222932608633399
  • Chiao-Chuan H, Cheng-Sheng C, I-Ming C, Lee-Shing F, Kwee ST (2011) Population dynamics of a landlocked and amphidromous freshwater shrimp, Caridina gracilipes (Decapoda: Caridea) in subtropical waters. Journal of Crustacean Biology 31: 278–285. https://doi.org/10.1651/10-3331.1
  • Covich AP, Crowl TA, Hein CL, Townsend MJ, McDowell WH (2009) Predator – prey interactions in river networks: comparing shrimp spatial refugia in two drainage basins. Freshwater Biology 54: 450–465. https://doi.org/10.1111/j.1365-2427.2008.02121.x
  • De Grave S, Fransen CHJM (2011) Carideorum catalogus: the recent species of the Dendrobranchiate, Stenopodidean, Procarididean and Caridean shrimps (Crustacea: Decapoda). Zoologische Mededelingen 85: 195–589. https://repository.naturalis.nl/pub/403473/ZM85-09_195-589_De_Grave.pdf
  • De Grave S, Cai Y, Anker A (2008) Global diversity of shrimps (Crustacea: Decapoda: Caridea) in freshwater. Hydrobiologia 595: 287–293. https://doi.org/10.1007/s10750-007-9024-2
  • De Grave S, Page TJ (2014) The status of the Australian genus Caridinides Calman, 1926 (Crustacea: Decapoda: Atyidae) with reference to recent phylogenetic studies. Zootaxa 3753: 398–400. https://doi.org/10.11646/zootaxa.3753.4.9
  • De Grave S, Smith KG, Adeler NA, Allen DJ (2015) Dead Shrimp Blues: A global assessment of extinction risk in freshwater shrimps (Crustacea: Decapoda: Caridea). PLoS ONE 10: 1–14. https://doi.org/10.1371/journal.pone.0120198
  • Duran B, Alvarez F (2025) Trophic ecology in an anchialine cave: A stable isotope study. PLoS ONE 20: 1–18. https://doi.org/10.1371/journal.pone.0315821
  • Engel AS (2007) Observations of the biodiversity of sulfidic karst habitats. Journal of Cave and Karst Studies 69: 187–206.
  • Fatemi Y, Malek-Hosseini MJ, Falniowski A, Hofman S, Kuntner M, Grego J (2019) Description of a new genus and species as the first gastropod species from caves in Iran. Journal of Cave and Karst Studies 81: 233–243. https://doi.org/10.4311/2019LSC0105
  • Feng S, Chen Q-H, Guo Z-L (2021) Integrative taxonomy uncovers a new stygobiotic Caridina species (Decapoda, Caridea, Atyidae) from Guizhou Province, China. ZooKeys 47: 29–47. https://doi.org/10.3897/zookeys.1028.63822
  • Gorgin GS (1996) The first record of two species of freshwater shrimps (Decapoda, Caridea, Atyidae) from Iran. Crustaceana 69: 662–668.
  • Gurney AR (1987) Puteonator iraqiensis gen. nov., sp. nov., a new genus in the family Atyidae (Decapoda, Caridea) from southern Iraq. Crustaceana 53: 160–169. https://doi.org/10.1163/156854087x00763
  • Holthuis LB (1993) The recent genera of the Caridean and Stenopodidean shrimps (Crustacea, Decapoda) with an appendix on the order Amphionidacea. Nationaal Natuurhistorisch Museum, Leiden, 328 pp. https://doi.org/10.5962/bhl.title.152891
  • Humphreys WF (1999) Physico-chemical profile and energy fixation in Bundera Sinkhole, an anchialine remiped habitat in north-western Australia. Journal of the Royal Society of Western Australia 82: 89–98. https://doi.org/10.5281/zenodo.16121295
  • Jugovic J, Prevorčnik S, Sket B (2010a) Development of sexual characters in the cave shrimp genus Troglocaris (Crustacea: Decapoda: Atyidae) and their applicability in taxonomy. Zootaxa 21: 1–21. https://doi.org/10.11646/zootaxa.2488.1.1
  • Jugovic J, Prevorčnik S, Aljančič G, Sket B (2010b) The atyid shrimp (Crustacea: Decapoda: Atyidae) rostrum: Phylogeny versus adaptation, taxonomy versus trophic ecology. Journal of Natural History 44: 2509–2533. https://doi.org/10.1080/00222933.2010.502258
  • Jugovic J, Prevorčnik S, Blejec A, Sket B (2011) Morphological differentiation in the cave shrimps Troglocaris (Crustacea: Decapoda: Atyidae) of the Dinaric karst - a consequence of geographical isolation or adaptation? Journal of Zoological Systematics and Evolutionary Research 49: 185–195. https://doi.org/10.1111/j.1439-0469.2010.00611.x
  • Jugovic J, Zakšek V, Petković M, Sket B (2019) A shrimp out of place. New genus of Atyidae (Crustacea: Decapoda) in subterranean waters of southeastern Europe, with some remarks on Atyidae taxonomy. Zoologischer Anzeiger 283: 111–123. https://doi.org/10.1016/j.jcz.2019.08.007
  • Jugovic J, Malek-Hosseini MJ, Issartel C, Konecny-Dupré L, Kuntner M, Fatemi Y, Flot JF, Douady CJ, Malard F (2024) A second species of Stenasellus Dollfus, 1897 (Isopoda, Stenasellidae) from sulfidic groundwater of Iran described using morphological and molecular methods. European Journal of Taxonomy 968: 256–274. https://doi.org/10.5852/ejt.2024.968.2733
  • Karami M, Gorgin S (2000) A preliminary study of freshwater shrimps distribution in Iran and indicating the research necessity. Pajouhesh and Sazandegi 49: 116–119.
  • Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010
  • Klotz W, von Rintelen T, Christodoulou M (2019) Middle East Caridina (Decapoda: Atyidae): Redescription of C. fossarum Heller, 1862, description of three new species, and remarks on the status of C. syriaca Bouvier, 1904 and C. babaulti basrensis Al-Adhub & Hamzah, 1987. Zoologischer Anzeiger 283: 161–185. https://doi.org/10.1016/j.jcz.2019.08.008
  • Lai HT, Shy JY (2009) The larval development of Caridina pseudodenticulata (Crustacea: Decapoda: Atyidae) reared in the laboratory, with a discussion of larval metamorphosis types. The Raffles Bulletin of Zoology 20: 97–107. https://lkcnhm.nus.edu.sg/wp-content/uploads/sites/11/app/uploads/2017/06/s20rbz097-107.pdf
  • Lanfear R, Calcott B, Ho SYW, Guindon S (2012) Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular biology and Evolution 29: 1695–701. https://doi.org/10.1093/molbev/mss020
  • Malek-Hosseini MJ, Zamani A (2017) A checklist of subterranean arthropods of Iran. Subterranean Biology 21: 19–46. https://doi.org/10.3897/subtbiol.21.10573
  • Malek-Hosseini MJ, Muilwijk J, Gregorič M, Kuntner M, Čandek K (2021) First insights into the origin of Iranian cave beetle diversity with description of two new species of the genus Duvalius (Carabidae). Journal of Zoological Systematics and Evolutionary Research 59: 1453–1469. https://doi.org/10.1111/jzs.12537
  • Malek-Hosseini MJ, Brad T, Fatemi Y, Kuntner M, Fišer C (2023) A new cave-dwelling hadzioid amphipod (Senticaudata, Hadzioidea, Melitidae) from sulfidic groundwaters in Iran. Contributions to Zoology 43: 107–126. https://doi.org/10.1163/18759866-bja10054
  • Malek-Hosseini MJ, Flot J-F, Fatemi Y, Babolimoakher H, Kuntner M, Diripasko OA, Jelić D, Bogutskaya NG (2023) The first record of a stygobiotic form of Garra rufa (Heckel, 1843), sympatric with Garra tashanensis Mousavi-Sabet, Vatandoust, Fatemi & Eagderi, 2016 (Teleostei, Cyprinidae), in Iranian subterranean waters. Subterranean Biology 46: 97–127. https://doi.org/10.3897/subtbiol.46.108396
  • Mamaghani-Shishvan M, Esmaeili-Rineh S, Akmali V, Fišer C (2024) A contribution to the knowledge of the genus Niphargus (Arthropoda: Crustacea: Amphipoda) in northwestern Iran. Zoologischer Anzeiger 312: 113–123. https://doi.org/10.1016/j.jcz.2024.07.012
  • Marin I, Sokolova A (2014) Redescription of the stygobitic shrimp Troglocaris (Xiphocaridinella) jusbaschjani Birštein, 1948 (Decapoda: Caridea: Atyidae) from Agura River, Sochi, Russia, with remarks on other representatives of the genus from Caucasus. Zootaxa 3754: 277–298. https://doi.org/10.11646/zootaxa.3754.3.3
  • Mazancourt V De, Marquet G, Keith P (2017) The "Pinocchio-shrimp effect": First evidence of variation in rostrum length with the environment in Caridina H. Milne-Edwards, 1837 (Decapoda: Caridea: Atyidae). Journal of Crustacean Biology 37: 249–257. https://doi.org/10.1093/jcbiol/rux025
  • Mousavi-Sabet H, Eagderi S (2016) Garra lorestanensis, a new cave fish from the Tigris River drainage with remarks on the subterranean fishes in Iran (Teleostei: Cyprinidae). FishTaxa 1: 45–54. https://fishtaxa.com/index.php/FishTaxa/article/view/122/120
  • Mousavi-Sabet H, Vatandoust S, Fatemi Y, Eagderi S (2016) Tashan Cave a new cave fish locality for Iran; and Garra tashanensis, a new blind species from the Tigris River drainage (Teleostei: Cyprinidae). FishTaxa 1: 133–148. https://fishtaxa.com/index.php/FishTaxa/article/view/133/131
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32: 268–274. https://doi.org/10.1093/molbev/msu300
  • Oh CW, Hartnoll RG (2004) Reproductive biology of the common shrimp Crangon crangon (Decapoda: Crangonidae) in the central Irish Sea. Marine Biology 144: 303–316. https://doi.org/10.1007/s00227-003-1205-6
  • Page TJ, Rintelen K Von, Hughes JM (2007a) An island in the stream: Australia's place in the cosmopolitan world of Indo-West Pacific freshwater shrimp (Decapoda: Atyidae: Caridina). Molecular Phylogenetics and Evolution 43: 645–659. https://doi.org/10.1016/j.ympev.2006.08.007
  • Page TJ, von Rintelen K, Hughes JM (2007b) Phylogenetic and biogeographic relationships of subterranean and surface genera of Australian Atyidae (Crustacea: Decapoda: Caridea) inferred with mitochondrial DNA. Invertebrate Systematics 21: 137–145. https://doi.org/10.1071/IS06023
  • Pandya PJ, Richard J (2019) Report of Caridina babaulti Bouvier, 1918 (Crustacea: Decapoda: Caridea: Atyidae) and description of a new species Caridina kutchi sp. nov. from Gujarat, India. Zootaxa 4568: 470–482. https://doi.org/10.11646/zootaxa.4568.3.3
  • Peterson DE, Finger KL, Iepure S, Mariani S, Montanari A, Namiotko T (2013) Ostracod assemblages in the frasassi caves and adjacent sulfidic spring and sentino river in the northeastern apennines of Italy. Journal of Cave and Karst Studies 75: 11–27. https://doi.org/10.4311/2011PA0230
  • Por FD, Dimentman C, Frumkin A, Naaman I (2013) Animal life in the chemoautotrophic ecosystem of the hypogenic groundwater cave of Ayyalon (Israel): A summing up. Natural Science 5: 7–13. https://doi.org/10.4236/ns.2013.54A002
  • Reboleira ASPS, Javad M, Hosseini M, Sadeghi S, Enghoff H (2015) Highly disjunct and highly infected millipedes – a new cave-dwelling species of Chiraziulus (Diplopoda: Spirostreptida: Cambalidae) from Iran and notes on Laboulbeniales ectoparasites. European Journal of Taxonomy 146: 1–18. https://doi.org/10.5852/ejt.2015.146
  • Riek EF (1953) The Australian freshwater prawns of the family Atyidae. Records of the Australian Museum 23: 111–121. https://doi.org/10.3853/j.0067-1975.23.1953.625
  • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
  • Sarbu S (2000) Movile Cave: a chemoautotrophically based groundwater ecosystem. In: Wilkens H, Culver DC, Humphreys WF (Eds) Ecosystems of the World. Elsevier, Amsterdam, The Netherlands, 319–343.
  • Tamura K, Stecher G, Kumar S (2021) MEGA11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution 38: 3022–3027. https://doi.org/10.1093/molbev/msab120
  • Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ (2016) W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Research 44: W232–W235. https://doi.org/10.1093/NAR/GKW256
  • Tsurnamal M (2008) A new species of the stygobiotic blind prawn Typhlocaris Calman, 1909 (Decapoda, Palaemonidae, Typhlocaridinae) from Israel. Crustaceana 81: 487–501. https://doi.org/10.1163/156854008783797534
  • Tu D Van, Dong D Van, von Rintelen T (2021) Description of one new species of freshwater shrimp of the genus Caridina (Crustacea: Decapoda: Atyidae) from two karst caves of Northern Vietnam. Zootaxa 4999: 228–242. https://doi.org/10.11646/zootaxa.4999.3.3
  • Urák I, Vrenozi B, Głąbiak Z, Lecoquierre N, Eiberger C, Maraun M, Ştefan A, Flot JF, Brad T, Dainelli L, Sarbu SM, Băncilă RI (2025) An extraordinary colonial spider community in Sulfur Cave (Albania/ Greece) sustained by chemoautotrophy. Subterranean Biology 53: 155–177. https://doi.org/10.3897/subtbiol.53.162344
  • Vijayamma JK, Dhamorikar A, Manchi S (2021) A new species of Caridina H. Milne Edwards, 1837 (Family: Atyidae) from a limestone cave on Interview Island, Andaman and Nicobar Islands, India. Zootaxa 5057: 402–414. https://doi.org/10.11646/zootaxa.5057.3.5
  • von Rintelen K, Page TJ, Cai Y, Roe K, Stelbrink B, Kuhajda BR, Iliffe TM, Hughes J, von Rintelen T (2012) Drawn to the dark side: A molecular phylogeny of freshwater shrimps (Crustacea: Decapoda: Caridea: Atyidae) reveals frequent cave invasions and challenges current taxonomic hypotheses. Molecular Phylogenetics and Evolution 63: 82–96. https://doi.org/10.1016/j.ympev.2011.12.015
  • Zare P, Naderi M, Eshghi H, Anastasiadou C (2011) Reproductive traits of the freshwater shrimp Caridina fossarum Heller, 1862 (Decapoda, Caridea, Atyidae) in the Ghomp-Atashkedeh spring (Iran). Limnologica 41: 244–248. https://doi.org/10.1016/j.limno.2010.11.003