Spatial Transcriptomics Datasets

Datasets from Visium, Slide-seq, Stereo-seq, STARmap, Xenium, CosMx, VisiumHD Spatial Transcriptomics Technologies. Additionally synthetic data generated using SRTsim package.

10X Visium: Dorsolateral Prefrontal Cortex (DLPFC, 12 slices), Human Breast Cancer (HBC), Mouse Brain Anterior (MBA), Human Ovarian Cancer (HOC), Human Lymph Node (HLN), and Mouse Kidney (MK).

Note: Data.zip contains only the DLPFC 151673 slice.

STARmap: Mouse Visual Cortex (MVC)

Stereo-seq: Mouse Brain (MB), Axolotl Brain (AB), and nine time-point samples from the Mouse Organogenesis Spatiotemporal Transcriptomic Atlas (MOSTA - E9.5 E1S1, E9.5 E2S1, E10.5 E1S1, E10.5 E2S1, E11.5 E1S1, E12.5 E1S1,
E12.5 E2S1, E13.5 E1S1, and E14.5 E1S1)

BaristaSeq: Mouse Primary Cortex (MPC) 

SlideSeq: Mouse Olfactory Bulb (MOB)

Xenium: Mouse Partial Coronal

CosMx: Simulated Human Lung Cancer (sHLC)

VisiumHD: Human Colorectal Cancer (HCC)

SRTsim: Synthetic(1 and 2) datasets, 12 cluster configurations. 

Ground-truth annotations are available for DLPFC 12 slices, HBC, MBA, MVC, AB, MOSTA 9 datasets, MPC, sHLC, and HCC.