There is a newer version of the record available.

Published March 17, 2026 | Version v3
Dataset Open

Rat pangenome graph

Authors/Creators

  • 1. ROR icon University of Kentucky

Description

Additional data files made available in support of Rat T2T genome assembly

1.        Genome assembly fasta A3.polish.rmmt.fasta

2.        Gene annotation gff by Liftoff  SHRSP_T2T_2-25.sorted.gff

3.        Braker annotation gff braker.sorted.gff3

4.        RepBase annotation gff  SHRSP_Repeatmasker_annotated_sorted.gff3

5.        Iso-Seq HQ reads aligned to assembly bam file SHRSP_19tiss_no_sec.sorted.bam

Notes

6. Rat pangenome graph made with Minigraph Cactus using the SHRSP-T2T assembly as backbone and including HiFi assemblies of SHR-B2, Dahl Salt Resistant (DS), F344, Brown Norwary (GRCr8), Lyon hypertensive (LH), Lyon normotensive (LN), and Wistar Kyoto (WKY)

Files

Files (51.9 MB)

Name Size Download all
md5:ac8264bf2e3144779916179ae865053c
51.9 MB Download

Additional details

Additional titles

Alternative title
Structural variant vcf file for rat pangenome