New insights into the phylogeny of Tetrigoidea (Insecta, Orthoptera), with the announcement of the first mitogenome of the genus Phaesticus
Authors/Creators
- 1. Shaanxi Normal University, Xi'an, China
Description
The mitochondrial genome (mitogenome) has been widely used to infer the phylogeny, origin and evolution of insects. Although mitogenomic data have been used to study the phylogenetic relationships of Tetrigoidea (Orthoptera), larger sample sizes were also essential to explore the detailed phylogenetic relationships of these taxa. In this study, two complete mitogenomic sequences were sequenced from Phaesticus moniliantennatus (formerly Flatocerus daqingshanensis and F. nankunshanensis). The mitogenome sequences were assembled, annotated and analyzed. The length of the mitogenomes was 16,147 and 16,224 bp, and the nucleotide composition was A>T>C>G, A-skew and C-skew. Large intergenic regions between trnS(ucn) and ND1 were identified with a length of 191–233 bp. Phylogenetic analyses showed that Batrachideinae formed the basal position of Tetrigoidea, followed by Tripetalocerinae. The monophyly of several subfamilies was not supported. Within Tetriginae, P. moniliantennatus clustered with a clade containing Systolederus spicupennis, S. hainanensis and S. zhengi (Metrodorinae), indicating their closer phylogenetic relationship. The divergence time results indicated that Batrachideinae diverged at 170.96 Ma and Tripetalocerinae diverged at 149.36 Ma. And the divergence time between P. moniliantennatus and the closely related Systolederus clade was 87.06 Ma. These results represent the available mitogenome sequences of the genus Phaesticus and provide a valuable data resource for reconstructing phylogenetic relationships and studying the differentiation of Tetrigoidea species.
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References
- Adžić K, Deranja M, Franjević D, Skejo J (2020) Are Scelimeninae (Orthoptera: Tetrigidae) monophyletic and why it remains a question? Entomological News 129(2): 128–146. https://doi.org/10.3157/021.129.0202
- Benson G (1999) Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Research 27(2): 573–580. https://doi.org/10.1093/nar/27.2.573
- Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF (2013) MITOS: Improved de novo metazoan mitochondrial genome annotation. Molecular Phylogenetics and Evolution 69(2): 313–319. https://doi.org/10.1016/j.ympev.2012.08.023
- Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Research 27(8): 1767–1780. https://doi.org/10.1093/nar/27.8.1767
- Chang H, Qiu Z, Yuan H, Wang X, Li X, Sun H, Guo X, Lu Y, Feng X, Majid M, Huang Y (2020) Evolutionary rates of and selective constraints on the mitochondrial genomes of Orthoptera insects with different wing types. Molecular Phylogenetics and Evolution 145: e106734. https://doi.org/10.1016/j.ympev.2020.106734
- Chen S, Zhou Y, Chen Y, Gu J (2018a) fastp: An ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34(17): i884–i890. https://doi.org/10.1093/bioinformatics/bty560
- Chen YZ, Deng WA, Wang JM, Lin LL, Zhou SY (2018b) Phylogenetic relationships of Scelimeninae genera (Orthoptera: Tetrigoidea) based on COI, 16S rRNA and 18S rRNA gene sequences. Zootaxa 4482(2): 392–400. https://doi.org/10.11646/zootaxa.4482.2.11
- Cigliano MM, Braun H, Eades DC, Otte D (2025) Orthoptera Species File. Version 5.0/5.0. Available from: http://Orthoptera.SpeciesFile.org
- Deng WA (2016) Taxonomic study of Tetrigoidea from China. PhD Thesis, Huazhong Agricultural University, Wuhan, China.
- Dierckxsens N, Mardulyn P, Smits G (2017) NOVOPlasty: De novo assembly of organelle genomes from whole genome data. Nucleic Acids Research 45(4): e18. https://doi.org/10.1093/nar/gkw955
- Ding JH, Wen TC, Wu XM, Boonmee S, Eungwanichayapant PD, Zha LS (2017) Species diversity of Tetrigidae (Orthoptera) in Guizhou, China with description of two new species. Journal of Natural History 51(13–14): 741–760. https://doi.org/10.1080/00222933.2017.1293749
- Du ZZ (2024) Phylogenetic analyses of Tetriginae (Orthoptera: Tetrigidae) based on the mitochondrial genome. Ms Thesis, Dali University, Yunnan, China.
- Gaugel SM, Hawlitschek O, Dey LS, Husemann M (2023) Evolution of mitogenomic gene order in Orthoptera. Insect Molecular Biology 32(4): 387–399. https://doi.org/10.1111/imb.12838
- Guan DL, Huang CM, Deng WA (2024) Reassessment of the phylogenetics of two pygmy grasshopper generic groups Tetrix and Systolederus through mitochondrial phylogenomics using four new mitochondrial genome assemblies. Insects 15(3): e174. https://doi.org/10.3390/insects15030174
- Kumar S, Stecher G, Suleski M, Hedges SB (2017) TimeTree: A resource for timelines, timetrees, and divergence times. Molecular Biology and Evolution 34(7): 1812–1819. https://doi.org/10.1093/molbev/msx116
- Li R, Ying X, Deng W, Rong W, Li X (2021a) Mitochondrial genomes of eight Scelimeninae species (Orthoptera) and their phylogenetic implications within Tetrigoidea. PeerJ 9: e10523. https://doi.org/10.7717/peerj.10523
- Li X, Liu Y, Lin L (2021b) Comparative mitogenomes and phylogenetic analysis reveal taxonomic relationship of genera Teredorus and Systolederus (Orthoptera, Tetrigoidea). Zootaxa 5027(1): 127–135. https://doi.org/10.11646/zootaxa.5027.1.7
- Lin MP, Li XD, Wei SZ, Deng WA (2015) Mitochondrial COI gene partial sequences and phylogenetic relationship of some groups of Tetrigoidea. Huazhong Nongye Daxue Xuebao 34(6): 40–48.
- Lin LL, Li XJ, Zhang HL, Zheng ZM (2017) Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea. PeerJ 5: e4002. https://doi.org/10.7717/peerj.4002
- Luo J, Zhang R, Deng W (2024) First mitogenomic characterization of Macromotettixoides (Orthoptera, Tetrigidae), with the descriptions of two new species. ZooKeys 195: 95–120. https://doi.org/10.3897/zookeys.1195.112623
- Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32(1): 268–274. https://doi.org/10.1093/molbev/msu300
- Ojala D, Montoya J, Attardi G (1981) tRNA punctuation model of RNA processing in Human mitochondria. Nature 290(5806): 470–474. https://doi.org/10.1038/290470a0
- Perna NT, Kocher TD (1995) Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. Journal of Molecular Evolution 41(3): 353–358. https://doi.org/10.1007/BF01215182
- Qin YC, Liu J, Li XD, Chen YZ, Deng WA (2023) On the specific status of Scelimena spicupennis and a new record of S. discalis from China with mitochondrial genome characterization (Orthoptera, Tetrigidae). ZooKeys 1185: 83–104. https://doi.org/10.3897/zookeys.1185.110148
- Rambaut A, Suchard M, Drummond A (2004) Tracer. http://tree.bio.ed.ac.uk/software/tracer/
- Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61(3): 539–542. https://doi.org/10.1093/sysbio/sys029
- Skejo J (2017) Taxonomic revision of the pygmy devils (Tetrigidae: Discotettiginae) with online social media as a new tool for discovering hidden diversity. M.Sc. dissertation, University of Zagreb, Zagreb.
- Skejo J, Pushkar TI, Kasalo N, Pavlović M, Deranja M, Adžić K, Tan MK, Rebrina F, Muhammad AA, Abdullah NA, Japir R, Chung AYC, Tumbrinck J (2022) Spiky pygmy devils: revision of the genus Discotettix (Orthoptera: Tetrigidae) and synonymy of Discotettiginae with Scelimeninae. Zootaxa 5217(1): 1–64. https://doi.org/10.11646/zootaxa.5217.1.1
- Song H, Amédégnato C, Cigliano MM, Desutter-Grandcolas L, Heads SW, Huang Y, Otte D, Whiting MF (2015) 300 million years of diversification: Elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene sampling. Cladistics 31(6): 621–651. https://doi.org/10.1111/cla.12116
- Tamura K, Stecher G, Kumar S (2021) MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution 38(7): 3022–3027. https://doi.org/10.1093/molbev/msab120
- Vaidya G, Lohman DJ, Meier R (2011) SequenceMatrix: Concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27(2): 171–180. https://doi.org/10.1111/j.1096-0031.2010.00329.x
- Wang L, Chen J, Xue X, Qin G, Gao Y, Li K, Zhang Y, Li XJ (2023) Comparative analysis of mitogenomes among three species of grasshoppers (Orthoptera: Acridoidea: Gomphocerinae) and their phylogenetic implications. PeerJ 11: e16550. https://doi.org/10.7717/peerj.16550
- Yang Z (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. Bioinformatics 13(5): 555–556. https://doi.org/10.1093/bioinformatics/13.5.555
- Zha LS, Skejo J, Mao BY, Ding JH (2021) Taxonomic revision of Phaesticus Uvarov and synonymy with Flatocerus Liang & Zheng syn. nov. (Orthoptera: Tetrigidae). Zootaxa 4965(3): e501514. https://doi.org/10.11646/zootaxa.4965.3.5
- Zhang HL, Zeng HH, Huang Y, Zheng ZM (2013) The complete mitochondrial genomes of three grasshoppers, Asiotmethis zacharjini, Filchnerella helanshanensis and Pseudotmethis rubimarginis (Orthoptera: Pamphagidae). Gene 517(1): 89–98. https://doi.org/10.1016/j.gene.2012.12.080
- Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT (2020) PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Molecular Ecology Resources 20(1): 348–355. https://doi.org/10.1111/1755-0998.13096
- Zheng ZM (2005) Fauna of Tetrigoidea from Western China. Science Press, Beijing.
- Zheng ZM, Zhang HL, Zeng HH (2011) The genus Flatocerus Liang and Zheng (Orthoptera: Tetrigidae) with description of a new species from China. Oriental Insects 45(1): 80–86. https://doi.org/10.1080/00305316.2011.590630