Published March 17, 2026
| Version preprint_review1
Dataset
Open
Data and models for : Cross-individual translation of spontaneous zebrafish brain activity through a shared latent representation
Authors/Creators
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1.
Laboratoire Jean Perrin
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2.
Université Paris Cité
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3.
Institut de Physique Théorique
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4.
Laboratoire de Physique de l'ENS
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5.
Sorbonne Université
Description
This repository contains data and model files used in the article Cross-individual translation of spontaneous zebrafish brain activity through a shared latent representation.
You can find the code to create those files and use them to produce the article figures here.
Whole‑brain Single‑Cell Datasets
WBSC.zip |
Archive of recorded whole‑brain single‑neuron binarized spike trains and 3D neuron coordinates. Each file is the form DATA_<FishName>.h5. |
Voxelized Datasets
Voxelized.zip |
Voxelized brain‑activity datasets (various resolutions). |
Voxelgrids.zip |
Corresponding voxel‑grid geometry files used to map activity onto brain volumes. |
Pretrained Voxelized RBMs
vRBMr_multivoxelized_6fish_20.0vox_M40_l2l10.1.h5 |
Main pretrained RBM for the multi‑fish voxelized dataset (20μm voxels). |
Dropped.zip |
RBMs trained using 5 fish and leaving-out 1 fish (20μm voxels). |
CrossValidation_VOX.zip |
RBMs trained for cross‑validation experiments on voxelized data from 1 fish. |
Repeats_VOX.zip |
Multiple training repeats of voxelized RBMs to assess variability. |
Pretrained Single‑Cell RBMs
bRBMs.zip |
Trained RBMs for individual fish using whole‑brain single‑cell data (teachers). |
biRBMs.zip |
Trained LaRBMs (students). |
biRBMs_before_training.zip |
Initialized but untrained student LaRBMs. |
Repeats_WBSC.zip |
Repeated training runs of single‑cell RBMs. |
Precomputed Analysis
WeightDist_6fish_WBSC_M100_l10.02_l2l10_sigma4_epsilon1.0e-5.h5 |
Spatial weight‑distribution metrics for whole-brain single-cell RBMs. |
DeepFakeFreeEnergy_6fish_WBSC_M100_l10.02_l2l10.h5 |
Free‑energy evaluations of translated neuronal configurations generated from the teacher and student RBMs. |
DeepFakeTransferMethods_6fish_WBSC_M100_l10.02_l2l10.h5 |
Analysis of different compute methods to translate neuronal configurations between brains. |
DeepFakeStats_6fish_WBSC_M100_l10.02_l2l10.h5 |
Summary statistics for translation analyses. |
DeepFakeActivityDistance_6fish_WBSC_M100_l10.02_l2l10.h5 |
Spatial distance metrics between translated neuronal activities. |
Files
biRBMs.zip
Files
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Additional details
Related works
- Is source of
- Preprint: 10.64898/2026.01.09.698719 (DOI)
Software
- Repository URL
- https://github.com/EmeEmu/ZebrafishSharedRBMs
- Programming language
- Julia
- Development Status
- Active