Published February 17, 2026 | Version v1
Journal article Open

Taxonomy and phylogeny of Pseudochaetosphaeronema associated with rubber trees from Yunnan Province, China

  • 1. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand|College of Biology and Food Engineering, Qujing Normal University, Qujing, China|School of Science, Mae Fah Luang University, Chiang Rai, Thailand
  • 2. College of Biology and Food Engineering, Qujing Normal University, Qujing, China
  • 3. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
  • 4. School of Science, Mae Fah Luang University, Chiang Rai, Thailand|Microbial Products and Innovations Research Group, Mae Fah Luang University, Chiang Rai, Thailand
  • 5. Bioeconomy Science Institute, Auckland, New Zealand
  • 6. Center of Excellence in Biotechnology Research (CEBR), King Saud University, Riyadh, Saudi Arabia
  • 7. Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
  • 8. College of Science, King Saud University, Riyadh, Saudi Arabia
  • 9. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand|Department Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany

Description

Approximately 77% of Pseudochaetosphaeronema species have been reported from China and Thailand in terrestrial habitats. We collected and isolated fruiting bodies of ascomycetous fungi in Yunnan Province, China, from dead branches of Hevea brasiliensis. Integrating morphology with phylogenetic analyses of combined ITS, LSU, SSU, and tef1-α sequence data, the strains were identified as a new species (Pseudochaetosphaeronema heveae), two new host records (P. baoshanense and P. chiangraiense), and a new collection (P. xishuangbannaense). Descriptions, illustrations, phylogenetic analysis results, and morphological comparisons with allied taxa of the four Pseudochaetosphaeronema species are provided. These findings expand the known diversity and host associations of Pseudochaetosphaeronema. In addition, based on morphological characteristics and molecular phylogenetic data, P. hongheense is synonymized under P. baoshanense.

Files

MC_article_182163.pdf

Files (5.2 MB)

Name Size Download all
md5:081488b1be9bc7690bac81dc50d91745
5.0 MB Preview Download
md5:6d5d36dfe6e4beae8e99fc3851916411
194.8 kB Preview Download

Linked records

Additional details

References

  • Ahmed SA, van de Sande WWJ, Stevens DA, Fahal A, van Diepeningen AD, Menken SBJ, de Hoog GS (2014) Revision of agents of black-grain eumycetoma in the order Pleosporales. Persoonia 33: 141–154. https://doi.org/10.3767/003158514X684744
  • Ahmed SA, Desbois N, Quist D, Miossec C, Atoche C, Bonifaz A, Hoog S (2015) Phaeohyphomycosis caused by a novel species: Pseudochaetosphaeronema martinelli. Journal of Clinical Microbiology 53. https://doi.org/10.1128/JCM.01456-15
  • Apurillo CCS, Phukhamsakda C, Hyde KD, Thiyagaraja V, Jones EBG (2025) New fungal genus, three novel species, and one new record from mangroves, with reclassification of Melanconiella (Melanconiellaceae) species. MycoKeys 116: 25–52. https://doi.org/10.3897/mycokeys.116.137351
  • Ariyawansa H, Hyde K, Jayasiri S, Buyck B, Kandawatte T, Dai D-Q, Dai Y, Daranagama D, Jayawardena R, Lücking R, Ghobad-Nejhad M, Niskanen T, Thambugala K, Voigt K, Zhao R-L, Li G-J, Doilom M, Boonmee S, Yang Z, Chen X-H (2015) Fungal Diversity Notes 111–252 – Taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 75: 27–274. https://doi.org/10.1007/s13225-015-0346-5
  • Boonmee S, Wanasinghe DN, Calabon MS, Huanraluek N, Chandrasiri SKU, Jones GEB, Rossi W, Leonardi M, Singh SK, Rana S, Singh PN, Maurya DK, Lagashetti AC, Choudhary D, Dai Y-C, Zhao C-L, Mu Y-H, Yuan H-S, He S-H, Phookamsak R, Jiang H-B, Martín MP, Dueñas M, Telleria MT, Kałucka IL, Jagodziński AM, Liimatainen K, Pereira DS, Phillips AJL, Suwannarach N, Kumla J, Khuna S, Lumyong S, Potter TB, Shivas RG, Sparks AH, Vaghefi N, Abdel-Wahab MA, Abdel-Aziz FA, Li G-J, Lin W-F, Singh U, Bhatt RP, Lee HB, Nguyen TTT, Kirk PM, Dutta AK, Acharya K, Sarma VV, Niranjan M, Rajeshkumar KC, Ashtekar N, Lad S, Wijayawardene NN, Bhat DJ, Xu R-J, Wijesinghe SN, Shen H-W, Luo Z-L, Zhang J-Y, Sysouphanthong P, Thongklang N, Bao D-F, Aluthmuhandiram JVS, Abdollahzadeh J, Javadi A, Dovana F, Usman M, Khalid AN, Dissanayake AJ, Telagathoti A, Probst M, Peintner U, Garrido-Benavent I, Bóna L, Merényi Z, Boros L, Zoltán B, Stielow JB, Jiang N, Tian C-M, Shams E, Dehghanizadeh F, Pordel A, Javan-Nikkhah M, Denchev TT, Denchev CM, Kemler M, Begerow D, Deng C-Y, Harrower E, Bozorov T, Kholmuradova T, Gafforov Y, Abdurazakov A, Xu J-C, Mortimer PE, Ren G-C, Jeewon R, Maharachchikumbura SSN, Phukhamsakda C, Mapook A, Hyde KD (2021) Fungal diversity notes 1387–1511: Taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal Diversity 111: 1–335. https://doi.org/10.1007/s13225-021-00489-3
  • Chaiwan N, Gomdola D, Wang S, Monkai J, Tibpromma S, Doilom M, Wanasinghe DN, Mortimer PE, Lumyong S, Hyde KD (2021) https://gmsmicrofungi.org: an online database providing updated information of microfungi in the Greater Mekong Subregion. Mycosphere: Journal of Fungal Biology 12: 1513–1526. https://doi.org/10.5943/mycosphere/12/1/19
  • Crous PW, Carris LM, Giraldo A, Groenewald JZ, Hawksworth DL, Hemández-Restrepo M, Jaklitsch WM, Lebrun MH, Schumacher RK, Stielow JB, van der Linde EJ, Vilcāne J, Voglmayr H, Wood AR (2015) The Genera of Fungi – fixing the application of the type species of generic names – G2: Allantophomopsis, Latorua, Macrodiplodiopsis, Macrohilum, Milospium, Protostegia, Pyricularia, Robillarda, Rotula, Septoriella, Torula, and Wojnowicia. IMA Fungus 6: 163–198. https://doi.org/10.5598/imafungus.2015.06.01.11
  • De Silva N, Hyde K, Lumyong S, Phillips A, Bhat D, Maharachchikumbura S, Thambugala K, Tennakoon D, Suwannarach N, Karunarathna S (2022) Morphology, phylogeny, host association and geography of fungi associated with plants of Annonaceae, Apocynaceae and Magnoliaceae. Mycosphere: Journal of Fungal Biology 13: 955–1076. https://doi.org/10.5943/mycosphere/13/1/12
  • Dissanayake A, Bhunjun CS, Maharachchikumbura S, Liu JK (2020) Applied aspects of methods to infer phylogenetic relationships amongst fungi. Mycosphere: Journal of Fungal Biology 11: 2653–2677. https://doi.org/10.5943/mycosphere/11/1/18
  • Du HZ, Chi MF, Wu N, Dissanayake AJ, Liu NG, Cheewangkoon R, Liu JK (2025) Taxonomic and phylogenetic insights to Dothideomycetes and Sordariomycetes associated with medicinal plants in Southwestern China. Mycosphere: Journal of Fungal Biology 16: 179–343. https://doi.org/10.5943/mycosphere/16/2/2
  • Hyde KD, Dong Y, Phookamsak R, Jeewon R, Bhat DJ, Jones EBG, Liu N-G, Abeywickrama PD, Mapook A, Wei D, Perera RH, Manawasinghe IS, Pem D, Bundhun D, Karunarathna A, Ekanayaka AH, Bao D-F, Li J, Samarakoon MC, Chaiwan N, Lin C-G, Phutthacharoen K, Zhang S-N, Senanayake IC, Goonasekara ID, Thambugala KM, Phukhamsakda C, Tennakoon DS, Jiang H-B, Yang J, Zeng M, Huanraluek N, Liu J-K (Jack), Wijesinghe SN, Tian Q, Tibpromma S, Brahmanage RS, Boonmee S, Huang S-K, Thiyagaraja V, Lu Y-Z, Jayawardena RS, Dong W, Yang E-F, Singh SK, Singh SM, Rana S, Lad SS, Anand G, Devadatha B, Niranjan M, Sarma VV, Liimatainen K, Aguirre-Hudson B, Niskanen T, Overall A, Alvarenga RLM, Gibertoni TB, Pfliegler WP, Horváth E, Imre A, Alves AL, da Silva Santos AC, Tiago PV, Bulgakov TS, Wanasinghe DN, Bahkali AH, Doilom M, Elgorban AM, Maharachchikumbura SSN, Rajeshkumar KC, Haelewaters D, Mortimer PE, Zhao Q, Lumyong S, Xu J, Sheng J (2020) Fungal diversity notes 1151–1276: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal Diversity 100: 5–277. https://doi.org/10.1007/s13225-020-00439-5
  • Hyde KD, Noorabadi MT, Thiyagaraja V, He MQ, Johnston PR, Wijesinghe SN, Armand A, Biketova AY, Chethana KWT, Erdoğdu M, Ge ZW, Groenewald JZ, Hongsanan S, Kušan I, Leontyev DV et al. (2024) The 2024 Outline of Fungi and fungus-like taxa. Mycosphere15: 5146–6239. https://doi.org/10.5943/mycosphere/15/1/25
  • Index Fungorum (2026) Index Fungorum. https://www.indexfungorum.org/Names/Names.asp [Accessed 2026-01-16]
  • Jayasiri SC, Hyde KD, Ariyawansa HA, Bhat J, Buyck B, Cai L, Dai Y-C, Abd-Elsalam KA, Ertz D, Hidayat I, Jeewon R, Jones EBG, Bahkali AH, Karunarathna SC, Liu J-K, Luangsa-ard JJ, Lumbsch HT, Maharachchikumbura SSN, McKenzie EHC, Moncalvo J-M, Ghobad-Nejhad M, Nilsson H, Pang K-L, Pereira OL, Phillips AJL, Raspé O, Rollins AW, Romero AI, Etayo J, Selçuk F, Stephenson SL, Suetrong S, Taylor JE, Tsui CKM, Vizzini A, Abdel-Wahab MA, Wen T-C, Boonmee S, Dai DQ, Daranagama DA, Dissanayake AJ, Ekanayaka AH, Fryar SC, Hongsanan S, Jayawardena RS, Li W-J, Perera RH, Phookamsak R, De Silva NI, Thambugala KM, Tian Q, Wijayawardene NN, Zhao R-L, Zhao Q, Kang J-C, Promputtha I (2015) The Faces of Fungi database: Fungal names linked with morphology, phylogeny and human impacts. Fungal Diversity 74: 3–18. https://doi.org/10.1007/s13225-015-0351-8
  • Jayasiri SC, Hyde KD, Jones EBG, McKenzie EHC, Jeewon R, Phillips AJL, Bhat DJ, Wanasinghe DN, Liu JK, Lu YZ, Kang JC, Xu JC, Karunarathna S (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. Mycosphere: Journal of Fungal Biology 10: 1–186. https://doi.org/10.5943/mycosphere/10/1/1
  • Larsson A (2014) AliView: A fast and lightweight alignment viewer and editor for large datasets. Bioinformatics 30: 3276–3278. https://doi.org/10.1093/bioinformatics/btu531
  • Li W, Liang R, Dissanayake A, Liu J (2023) Mycosphere Notes 413–448: Dothideomycetes associated with woody oil plants in China. Mycosphere: Journal of Fungal Biology 14: 1436–1529. https://doi.org/10.5943/mycosphere/14/1/16
  • Lin C, Deng L, Cai J, Sun R (2021) Research progress on anthracnose of Hevea brasiliensis in China. Journal of Tropical Biology 12: 393–402.
  • Ling Z, Shi Z, Gu S, Wang T, Zhu W, Feng G (2022) Impact of climate change and rubber (Hevea brasiliensis) plantation expansion on reference evapotranspiration in Xishuangbanna, Southwest China. Frontiers in Plant Science 13. https://doi.org/10.3389/fpls.2022.830519
  • Liu RM, Xu RF, Elgorban A, Xu JC, Dai DQ, Suwannarach N, Karunarathna SC, Tibpromma S (2025) Morphology and multigene phylogeny unveil Waltergamsia xishuangbannaensis sp. nov. (Bionectriaceae, Hypocreales), associated with Pará rubber (Hevea brasiliensis) from Yunnan Province, China. Phytotaxa 682: 138–150. https://doi.org/10.11646/phytotaxa.682.2.2
  • Lu L, Karunarathna SC, Xiong Y, Han LS, Chen XM, Xu RF, Liu XF, Zeng XY, Dai DQ, Elgorban A, Jayawardena R, Hyde KD, Tibpromma S (2025) Taxonomy and systematics of micro-fungi associated with Coffea in southern China and northern Thailand. Fungal Diversity 25: 1–275. https://doi.org/10.1007/s13225-025-00566-x
  • Manawasinghe I, Hyde KD, Wanasinghe D, Karunarathna S, Maharachchikumbura S, Samarakoon MC, Voglmayr H, Pang KL, Chiang M, Jones E, Saxena R, Kumar A, Rajeshkumar KC, Selbmann L, Coleine C, Hu Y, Ainsworth A, Liimatainen K, Niskanen T, Xu B (2024) Fungal diversity notes 1818–1918: Taxonomic and phylogenetic contributions on genera and species of fungi. Fungal Diversity 130: 1–261. https://doi.org/10.1007/s13225-024-00541-y
  • Nair KP (2021) Rubber (Hevea brasiliensis). In: Nair KP (Ed.) Tree Crops: Harvesting Cash from the World's Important Cash Crops. Springer International Publishing, Cham, 287–332. https://doi.org/10.1007/978-3-030-62140-7_8
  • Nizamani MM, Zhang Q, Zhang H, Wang Y (2023) Checklist of the fungi associated with the rubber tree (Hevea brasiliensis). Cream 13: 439–488. https://doi.org/10.5943/cream/13/1/17
  • Nylander J (2004) MrModeltest V2. Program Distributed by the Author. Bioinformatics 24: 581–583. https://doi.org/10.1093/bioinformatics/btm388
  • Phookamsak R, Jiang H, Suwannarach N, Lumyong S, Xu J, Xu S, Liao CF, Chomnunti P (2022) Bambusicolous fungi in Pleosporales: Introducing four novel taxa and a new habitat record for Anastomitrabeculia didymospora. Journal of Fungi 8: e630. https://doi.org/10.3390/jof8060630
  • Punithalingam E (1979) Sphaeropsidales in culture from humans. Nova Hedwigia 31: 119–151.
  • Qi DL, Wu ZX, Chen BQ, Zhang XC, Yang C, Fu QM (2024) Integrative cultivation pattern, distribution, yield, and potential benefit of rubber-based agroforestry system in China. Industrial Crops and Products 220: e119228. https://doi.org/10.1016/j.indcrop.2024.119228
  • Rambaut A (2012) FigTree v1.4. University of Oxford, Oxford.
  • Rathnayaka A, Tennakoon D, Jones G, Wanasinghe D, Bhat DJ, Priyashantha AKH, Stephenson S, Tibpromma S, Karunarathna S (2024) Significance of precise documentation of hosts and geospatial data of fungal collections, with an emphasis on plant-associated fungi. New Zealand Journal of Botany: 1–28. https://doi.org/10.1080/0028825X.2024.2381734
  • Rehner S, Buckley E (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: Evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. https://doi.org/10.3852/mycologia.97.1.84
  • Senanayake IC, Rathnayaka AR, Marasinghe DS, Calabon MS, Gentekaki E, Lee HB, Hurdeal VG, Pem D, Dissanayake LS, Wijesinghe SN (2020) Morphological approaches in studying fungi: Collection, examination, isolation, sporulation and preservation. Mycosphere: Journal of Fungal Biology 11: 2678–2754. https://doi.org/10.5943/mycosphere/11/1/20
  • Senwanna C, Mapook A, Samarakoon MC, Karunarathna A, Wang Y, Tang A, Haituk S, Suwannarach N, Hyde K, Cheewangkoon R (2021) Ascomycetes on Para rubber (Hevea brasiliensis). Mycosphere: Journal of Fungal Biology 12: 1334–1512. https://doi.org/10.5943/mycosphere/11/1/20
  • Species Fungorum (2026) Species Fungorum. http://www.speciesfungorum.org/Names/Names.asp [Accessed 2026-01-16]
  • Talley SM, Coley PD, Kursar TA (2002) The effects of weather on fungal abundance and richness among 25 communities in the Intermountain West. BMC Ecology 2: 1–7. https://doi.org/10.1186/1472-6785-2-7
  • Tan YP, Shivas RG (2024) Index of Australian Fungi no. 46. https://zenodo.org/records/13905938 [August 21, 2025]
  • Tanaka K, Hirayama K, Yonezawa H, Sato G, Toriyabe A, Kudo H, Hashimoto A, Matsumura M, Harady Y, Kurihara Y, Shirouzu T, Hosoya T (2015) Revision of the Massarineae (Pleosporales, Dothideomycetes). Studies in Mycology 82: 75–136. https://doi.org/10.1016/j.simyco.2015.10.002
  • Theodoro GF, Batista TS (2014) Detection of fungi in rubber tree (Hevea brasiliensis) seeds harvested in northeast of Mato Grosso do Sul, Brazil. Agrarian (Dourados) 7: 365–368.
  • Tian XG, Bao DF, Karunarathna SC, Jayawardena RS, Hyde KD, Bhat DJ, Luo ZL, Elgorban AM, Hongsanan S, Rajeshkumar KC, Maharachchikumbura SSN, Suwannarach N, Dawoud TM, Lu YZ, Han JJ, Xiao YP, Du TY, Lu L, Xu RF, Dai DQ, Liu XF, Liu C, Tibpromma S (2024) Taxonomy and phylogeny of ascomycetes associated with selected economically important monocotyledons in China and Thailand. Mycosphere: Journal of Fungal Biology 15: 1–274. https://doi.org/10.5943/mycosphere/15/1/1
  • Tibpromma S, Hyde KD, McKenzie EHC, Bhat DJ, Phillips AJL, Wanasinghe DN, Samarakoon MC, Jayawardena RS, Dissanayake AJ, Tennakoon DS, Doilom M, Phookamsak R, Tang AMC, Xu J, Mortimer PE, Promputtha I, Maharachchikumbura SSN, Khan S, Karunarathna SC (2018) Fungal diversity notes 840–928: Micro-fungi associated with Pandanaceae. Fungal Diversity 93: 1–160. https://doi.org/10.1007/s13225-018-0408-6
  • Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
  • Wanasinghe DN, Hyde KD, Jeewon R, Crous PW, Wijayawardene NN, Jones EBG, Bhat DJ, Phillips AJL, Groenewald JZ, Dayarathne MC, Phukhamsakda C, Thambugala KM, Bulgakov TS, Camporesi E, Gafforov YS, Mortimer PE, Karunarathna SC (2017) Phylogenetic revision of Camarosporium (Pleosporineae, Dothideomycetes) and allied genera. Studies in Mycology 87: 207–256. https://doi.org/10.1016/j.simyco.2017.08.001
  • Wanasinghe DN, Phookamsak R, Dissanayake LS, Xu J, Wanasinghe DN, Phookamsak R, Dissanayake LS, Xu J (2025) Unexplored microfungal diversity from dead woody litter in the dry-hot valleys of Honghe (Yunnan, China). Studies in Fungi 10. https://doi.org/10.48130/sif-0025-0016
  • Wang Y, Zhang L (2025) From primary forests to rubber plantations: A huge ecological loss. The Innovation 6: e100836. https://doi.org/10.1016/j.xinn.2025.100836
  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics. Academic Press, San Diego, 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
  • Wijayawardene N, Hyde KD, Dai DQ, Sánchez-García M, Goto B, Saxena R, Erdoğdu M, Selçuk F, Rajeshkumar K, Aptroot A, Błaszkowski J, Boonyuen N, Da Silva G, De Souza F, Dong W, Ertz D, Haelewaters D, Jones E, Karunarathna SC, Kirk P, Kukwa M, Kumla J, Leontyev D, Lumbsch H, Maharachchikumbura S, Marguno F, Martínez-Rodríguez P, Mešić A, Monteiro J, Oehl F, Pawłowska J, Pem D, Pfliegler W, Phillips A, Pošta A, He M, Li J, Raza M, Sruthi O, Suetrong S, Suwannarach N, Tedersoo L, Thiyagaraja V, Tibpromma S, Tkalčec Z, Tokarev Y, Wanasinghe D, Wijesundara D, Wimalaseana S, Madrid H, Zhang G, Gao Y, Sánchez-Castro I, Tang L, Stadler M, Yurkov A, Thines M (2022) Outline of Fungi and fungus-like taxa – 2021. Mycosphere: Journal of Fungal Biology 13: 53–453. https://doi.org/10.5943/mycosphere/13/1/2
  • Xu L, Tan D, Zhang J (2019) Advances in the study of endophytic biological resources of rubber tree. Chinese Journal of Tropical Agriculture Science 39: 1–7.
  • Xu RF, Thiyagaraja V, Dai DQ, Karunarathna SC, Tibpromma S (2022) Additions to Fitzroyomyces (Stictidaceae, Ascomycota) from Yunnan Province, China. Phytotaxa 548: 253–266. https://doi.org/10.11646/phytotaxa.548.2.8
  • Xu RF, Phukhamsakda C, Dai D, Karunarathna S, Tibpromma S (2023) Kirschsteiniothelia xishuangbannaensis sp. nov. from pará rubber (Hevea brasiliensis) in Yunnan, China. Current Research in Environmental & Applied Mycology 13: 34–56. https://doi.org/10.5943/cream/13/1/3
  • Xu RF, Karunarathna S, Phukhamsakda C, Dai DQ, Elgorban A, Suwannarach N, Kumla J, Wang XY, Tibpromma S (2024) Four new species of Dothideomycetes (Ascomycota) from Pará Rubber (Hevea brasiliensis) in Yunnan Province, China. MycoKeys 103: 71–95. https://doi.org/10.3897/mycokeys.103.117580
  • Xu RF, Karunarathna S, Hyde K, Kakumyan P, Elgorban A, Phukhamsakda C, Tibpromma S (2025) Morphology and multigene phylogeny reveal a new species and a new record of saprobic Dothideomycetes from Hevea brasiliensis in Yunnan Province, China. Phytotaxa 690: 63–76. https://doi.org/10.11646/phytotaxa.690.1.5
  • Zeng XY, Tan TJ, Tian FH, Wang Y, Wen TC (2023) OFPT: A one-stop software for fungal phylogeny. Mycosphere: Journal of Fungal Biology 14: 1730–1741. https://doi.org/10.5943/mycosphere/14/1/20
  • Zhang T, Deng X, Yu Y, Zhang M, Zhang Y (2016) Pseudochaetosphaeronema ginkgonis sp. nov., an endophyte isolated from Ginkgo biloba. International Journal of Systematic and Evolutionary Microbiology 66: 4377–4381. https://doi.org/10.1099/ijsem.0.001359