Published June 18, 2015
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The Comparative Methods in R (R-Phylo) wiki
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Description
This is a snapshot of the R-Phylo (Comparative Methods in R) wiki taken in June 2015. The live version of the wiki is at http://r-phylo.org.
Phylogenetic comparative methods
All organisms are linked together by the tree of life. We can use this tree along with trait data, to understand many aspects of biology: does specialization lead to increased speciation? do body size and brain size coevolve? how have genome sizes changed over time? and more. R has many functions to address such questions. This website has tutorials on how to do these analyses in R and an overview of what is available in R.
- Tutorials table of contents
- Overview of analyses and packages available in R
- Wish list - let the community know what you would like to see available in R
- Useful links
- Mailing list for asking questions about using and developing comparative methods in R. The mailing list is archived here.
These pages grew out of a Hackathon on Comparative Methods in R held at the National Evolutionary Synthesis Center (NESCent) 10-14 December 2007.
Notes
Instructions on how to import the dump into a MediaWiki instance can be found at MediaWiki: https://www.mediawiki.org/wiki/Manual:Importing_XML_dump. Every dump consists of two files, an .xml.gz and a .tar.gz. The .xml.gz is
processed by importDump.php, the .tar.gz is processed by importImages.php,
as per the above documentation.
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