nf-core

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Published March 12, 2026 | Version 5.4.1
Software Open

nf-core/mag: mag 5.4.1 - Yellow Frog patch

Authors/Creators

  • 1. HKI Jena, MPI-EVA Leipzig
  • 2. @qbicsoftware
  • 3. Universidad de Magallanes
  • 4. Quantitative Biology Center (QBiC)
  • 5. Clinical Genetics, Umeå University Hospital
  • 6. Wellcome Sanger
  • 7. Folkhalsomyndigheten
  • 8. Linnaeus University & Stockholm University
  • 9. University of Fribourg
  • 10. University of Washington
  • 11. Swansea University
  • 12. @seqeralabs
  • 13. Bioinformatician
  • 14. Radboudumc
  • 15. QBiC @qbicsoftware
  • 16. Seqera

Description

Changed

  • #993 - Tweak test_full resources to stop failures (by @jfy133)
  • #995 - Update CheckM and BUSCO modules (by @dialvarezs)

Fixed

  • #974 - Re-add accidently removed functionality for using metaSPAdes contigs downstream rather than scaffolds (reported by @Pranjal-Bioinfo, fix by @jfy133)
  • #984 - Fix docs regarding usage of Bin QC tool scores when filtering bins for post-processing (by @dialvarezs, @claude)
  • #987 - Fix several documentation issues (by @dialvarezs)
  • #988 - Fix regarding validation of column long_reads_platform in the input samplesheet (#985 by @vinisalazar)
  • #986 - Fix faulty ALE version YAML loading resulting in a snakeyaml error (by @jfy133)
  • #992 - Fix command to get python package versions on local modules (by @dialvarezs)

Dependencies

| Tool | Previous version | New version | | ------ | ---------------- | ----------- | | CheckM | 1.2.3 | 1.2.5 |

Full Changelog: https://github.com/nf-core/mag/compare/5.4.0...5.4.1

Files

nf-core/mag-5.4.1.zip

Files (4.4 MB)

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md5:a072b685b11ccbd64974f70af8043fff
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/mag/tree/5.4.1 (URL)

Software

Repository URL
https://github.com/nf-core/mag