Combining pangenomics and population genetics finds chromosomal re-arrangements, diversified chromosome segments, copy number variations and transposon polymorphisms in wheat and rye powdery mildew

Here are the files of the Blumeria graminis pangenome study. Included are the initial assembly files ("_HGAP4.contigset.fasta"), the final genome assembly files ("_genome_v1.fasta"), the coding sequence files ("_CDS_v1_1.fasta"), the protein files ("_CDS_v1_1_aa.fasta"), the annotation files ("_CDS_v1_1.gff"), the transposable element databases used ("nrTREP") and vcf files used as input for some analyses (".vcf"). We also include Supporting Information.