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Published March 9, 2026 | Version v2.1
Software Open

github.com/iwc-workflows/hi-c-contact-map-for-assembly-manual-curation/main

Authors/Creators

  • 1. The Pennsylvania State University Eberly College of Science

Description

This workflow generates Hi-C contact maps for genome assemblies in the Pretext format. It is compatible with one or 2 haplotypes. It includes tracks for PacBio read coverage, Gaps, and telomeres. The Pretext files can be open in PretextView for the manual curation of genome assemblies.

Files

github.com-iwc-workflows-hi-c-contact-map-for-assembly-manual-curation-main_v2.1.zip

Files (33.1 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.18923446 (URL)
https://dockstore.org/workflows/github.com/iwc-workflows/hi-c-contact-map-for-assembly-manual-curation/main:v2.1 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhi-c-contact-map-for-assembly-manual-curation%2Fmain/versions/v2.1/PLAIN-gxformat2/descriptor/hi-c-map-for-assembly-manual-curation.ga (URL)