Published March 9, 2026 | Version 1.0.0
Software Open

BioRemPP: A Compound-Centric Web Server for Bioremediation Potential Profiling

Authors/Creators

  • 1. ROR icon Universidade Federal do Rio Grande do Norte

Contributors

  • 1. ROR icon Universidade Federal do Rio Grande do Norte

Description

Overview

BioRemPP (Bioremediation Potential Profile) is a web-based computational platform designed to assess and visualize the bioremediation potential of microbial communities from functional annotation data. The platform enables researchers to systematically link pollutant compounds with their degradation pathways, toxicological profiles, and regulatory status across multiple international frameworks.

Database Statistics (v1.0.0)

Component Count
Database entries 10,869
Unique compounds 384
KEGG Orthology identifiers 1,541
Compound classes 12
Regulatory frameworks 9
ToxCSM endpoints 31

Associated Resources

  • Web Server: https://bioinfo.imd.ufrn.br/biorempp/
  • Database DOI: https://doi.org/10.5281/zenodo.18905195    
  • Manuscript: [DOI to be assigned upon publication]

 

License

This software is released under the Apache 2.0.

Users should note that BioRemPP integrates with external databases that retain their original licensing terms:

  • KEGG: Academic use license (https://www.kegg.jp/kegg/legal.html)
  • ChEBI: CC BY 4.0 (https://www.ebi.ac.uk/chebi/)
  • HADEG: Open access
  • ToxCSM: Public platform for academic use

Installation

Detailed installation instructions are provided in the README.md file.

 

Contact

For questions, bug reports, or feature requests:

  • Submit issues via the GitHub repository https://github.com/BioRemPP/biorempp_web/issues
  • Contact: dougbiomed@gmail.com

Files

biorempp_web-main.zip

Files (172.8 MB)

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Additional details

Dates

Submitted
2026-03-09

Software

Programming language
Python
Development Status
Active