Published March 4, 2026
| Version 5.4.0
Software
Open
nipy/nibabel: 5.4.0
Authors/Creators
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Markiewicz, Christopher J.1
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Brett, Matthew2
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Hanke, Michael3
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Côté, Marc-Alexandre4
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Cipollini, Ben5
- McCarthy, Paul
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Papadopoulos Orfanos, Dimitri6
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Jarecka, Dorota7
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Cheng, Christopher P.8
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Larson, Eric9
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Halchenko, Yaroslav O.10
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Cottaar, Michiel11
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Ghosh, Satrajit12
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Wassermann, Demian13
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Gerhard, Stephan14
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Lee, Gregory R.15
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Baratz, Zvi
- Moloney, Brendan
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Wang, Hao-Ting
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Kastman, Erik16
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Kaczmarzyk, Jakub7
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Guidotti, Roberto17
- Daniel, Jonathan
- Duek, Or
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Rokem, Ariel18
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Scheltienne, Mathieu19
- Madison, Cindee
- Sólon, Anibal
- Morency, Félix C.
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Goncalves, Mathias7
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Markello, Ross20
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Riddell, Cameron21
- Burns, Christopher
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Millman, Jarrod22
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Gramfort, Alexandre23
- Leppäkangas, Jaakko
- van den Bosch, Jasper J.F.
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Legarreta, Jon Haitz24
- Vincent, Robert D.
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Braun, Henry25
- Subramaniam, Krish
- Van, Andrew
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Gorgolewski, Krzysztof J.26
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Raamana, Pradeep Reddy27
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Klug, Julian28
- Vos de Wael, Reinder
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Nichols, B. Nolan29
- Baker, Eric M.
- Koudoro, Serge
- Hayashi, Soichi
- Pinsard, Basile
- Haselgrove, Christian
- Hymers, Mark
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Esteban, Oscar30
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Pérez-García, Fernando31
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Becq, Guillaume32
- Dockès, Jérôme
- Oosterhof, Nikolaas N.
- Amirbekian, Bago
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Thyreau, Benjamin33
- Christian, Horea
- Nimmo-Smith, Ian
- Nguyen, Ly
- Suter, Peter
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Reddigari, Samir34
- St-Jean, Samuel
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Daniel, Alex35
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Panfilov, Egor
- Garyfallidis, Eleftherios
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Varoquaux, Gael36
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Newton, Joshua37
- Hahn, Kevin S.
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Waller, Lea38
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Ayala, Leonardo
- Hinds, Oliver P.
- Sandro
- Fauber, Bennet
- Dewey, Blake
- Perez, Fabian
- Roberts, Jacob
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Poline, Jean-Baptiste39
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Stutters, Jon40
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Jordan, Kesshi41
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Cieslak, Matthew42
- Moreno, Miguel Estevan
- Hrnčiar, Tomáš
- Haenel, Valentin
- Schwartz, Yannick
- Beasley, Benjamin A.
- Darwin, Benjamin C43
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Thirion, Bertrand36
- Gauthier, Carl
- Notte, Clorindo
- Solovey, Igor
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Gonzalez, Ivan44
- Palasubramaniam, Jath
- Cluce, Jon
- Lecher, Justin
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Leinweber, Katrin45
- Raktivan, Konstantinos46
- Calábková, Markéta
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Fischer, Peter47
- Gervais, Philippe
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Gau, Rémi48
- Gadde, Syam
- Ballinger, Thomas
- Roos, Thomas
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Reddam, Venkateswara Reddy49
- freec84
- 1. Stanford University
- 2. School of Psychology, University of Birmingham, Birmingham, UK
- 3. Otto-von-Guericke-University Magdeburg, Germany
- 4. Microsoft Research, Montréal, Québec, Canada
- 5. UC San Diego
- 6. CEA
- 7. MIT
- 8. Center for Open Neuroscience, Dartmouth College
- 9. University of Washington: Seattle, WA, United States
- 10. Dartmouth College: Hanover, NH, United States
- 11. Wellcome Centre for Integrative Neuroimaging, University of Oxford, UK
- 12. MIT, HMS
- 13. Athena EPI, Inria Sophia-Antipolis
- 14. Institute of Neuroinformatics, ETH/University of Zurich
- 15. Deptartment of Radiology, University of Cincinnati College of Medicine, Cincinnati, OH
- 16. Harvard University - Psychology
- 17. Department of Computer Science, Aalto University, Espoo, Finland and Department of Neuroscience, Imaging and Clinical Sciences, University G. D'Annunzio, Chieti, Italy
- 18. The University of Washington eScience Institute
- 19. Human Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland
- 20. Montreal Neurological Institute and Hospital
- 21. Department of Psychology, University of California Davis, CA, USA
- 22. Berkeley Institute for Data Science, UC Berkeley
- 23. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
- 24. Brigham and Women's Hospital, Mass General Brigham/Harvard Medical School
- 25. Center for Magnetic Resonance Research, University of Minnesota
- 26. Google
- 27. Rotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada
- 28. University of Geneva, Switzerland
- 29. SRI International
- 30. Department of Psychology, Stanford University, CA, USA
- 31. University College London
- 32. CRNS, France
- 33. Tohoku University
- 34. BrainSpec, Boston, MA
- 35. Sir Peter Mansfield Imaging Centre, University of Nottingham, UK
- 36. INRIA
- 37. Polytechnique Montréal, Montréal, CA
- 38. Charite Universitatsmedizin Berlin, Germany
- 39. McGill University
- 40. University College London, London, UK
- 41. University of California, San Francisco
- 42. Department of Neuropsychiatry, University of Pennsylvania
- 43. Hospital for Sick Children
- 44. Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA
- 45. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
- 46. National Technical University of Athens, Greece
- 47. Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- 48. Inria, Saclay, France
- 49. National Institute of Mental Health and Neuro-Sciences, India
Description
Release notes
New feature release in the 5.4.x series.
This release requires a minimum Python of 3.10 and NumPy 1.25, and has been tested up to Python 3.14 and NumPy 2.4.
New features
- Add mode parameter to nibabel.processing.conform (#1396) (Clorindo Notte, reviewed by CM)
Enhancements
- Label image axes consistently in cases of extreme obliquity (#1450) (Leonardo Ayala, reviewed by CM)
- Use compressionzstd or
backports.zstdin preference topyzstd(#1444) (PM, reviewed by CM) - Support PAR/REC files generated by Philips R11 consoles (#1430) (Alex Daniel, reviewed by CM)
- Add stub file for top-level nibabel module, improving support in code analyzers (#1436) (Jon Cluce, reviewed by CM)
- Use informative error message for missing file attribute in TCKFile header (#1422) (Jon Haitz Legarreta Gorroño, reviewed by CM)
- Support
ushortdatatypes in MGH/MGZ files (#1415) (Benjamin Thyreau, reviewed by CM) - Simplify nibabel.cmdline.utils.table2string implementation (#1403) (CM)
Bug fixes
- Fix type-checking errors in nibabel.volumeutils.rec2dict (#1424) (Jon Haitz Legarreta Gorroño, reviewed by CM)
- Adapt to functools.partial becoming a method descriptor in Python 3.14 (#1391) (Benjamin Beasley, reviewed by CM)
Maintenance
- Split pre-release tests into cron job (#1466) (CM, reviewed by Remi Gau)
- Adapt to numpy 2.5 deprecation of setting shape attributes (#1452) (CM)
- Document and test support for osPathLike objects in streamlines APIs (#1435) (Jon Haitz Legarreta Gorroño, reviewed by CM)
- Drop CI tests on Intel Macs (#1439) (Dimitri Papadopoulos, reviewed by CM)
- Update license metadata using SPDX expression (#1425) (Dimitri Papadopoulos, reviewed by CM)
- Test on Python 3.14, us locking tox runners (#1431, #1447) (CM)
- Update style checker (ruff) and address new complaints (#1405, #1406, #1433) (CM, Dimitri Papadopoulos)
- Add broad testing for Python 3.13 (#1381) (CM)
- Build docs on PRs with ReadTheDocs to permit quick inspection. (#1398) (CM)
API changes and deprecations
- Drop support for Python 3.9, Numpy < 1.25 (#1448) (CM)
New Contributors
- @musicinmybrain made their first contribution in https://github.com/nipy/nibabel/pull/1391
- @nightwnvol made their first contribution in https://github.com/nipy/nibabel/pull/1396
- @bthyreau made their first contribution in https://github.com/nipy/nibabel/pull/1415
- @shnizzedy made their first contribution in https://github.com/nipy/nibabel/pull/1436
- @alexdaniel654 made their first contribution in https://github.com/nipy/nibabel/pull/1432
- @leoyala made their first contribution in https://github.com/nipy/nibabel/pull/1450
Full Changelog: https://github.com/nipy/nibabel/compare/5.3.3...5.4.0
Files
nipy/nibabel-5.4.0.zip
Files
(4.9 MB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/nipy/nibabel/tree/5.4.0 (URL)
Software
- Repository URL
- https://github.com/nipy/nibabel