Published March 3, 2026 | Version v1.0.0
Software Open

SamOliveiraLab/Deepweed: Deepweed v1.0.0

Authors/Creators

  • 1. ROR icon North Carolina Agricultural and Technical State University
  • 2. ROR icon University of North Carolina at Greensboro
  • 3. EDMO icon The University of Texas at Austin
  • 4. ROR icon Stony Brook University

Description

Deepweed v1.0.0

What's included

  • End-to-end duckweed segmentation + tracking + lineage inference pipeline
  • Petri dish mode (JPEG/PNG sequence) and microfluidics mode (AVI)
  • Pretrained U-Net weights included via Git LFS

How to run

  • Follow README installation steps
  • Run: paper_analysis/Duckweed_Paper_Analysis.ipynb

Files

SamOliveiraLab/Deepweed-v1.0.0.zip

Files (13.8 kB)

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md5:b8e27689651560baceaa1e701df34a77
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Additional details

Related works

Is supplement to
Software: https://github.com/SamOliveiraLab/Deepweed/tree/v1.0.0 (URL)

Software

Repository URL
https://github.com/SamOliveiraLab/Deepweed