Dataset and R code for: Bacterial supplementation shapes honey bee gut microbiota and host metabolism under controlled and field conditions
Authors/Creators
-
1.
Czech University of Life Sciences Prague
Contributors
Project members:
Researchers:
- 1. Masaryk University, Faculty of Science
-
2.
Masaryk University
-
3.
Bee Research Institute
-
4.
Czech University of Life Sciences Prague
- 5. Institute of Animal Physiology and Genetics CAS Prague
-
6.
Charles University
- 7. Výzkumný ústav včelařský, s.r.o.
- 8. Maynooth University
Description
This repository contains processed datasets, metadata, and scripts used to generate the figures and statistical analyses reported in the manuscript.
Raw sequencing and proteomics data are deposited in public repositories and referenced in the manuscript.
External repositories
• 16S rRNA sequencing data: NCBI Sequence Read Archive (SRA) under BioProject PRJNA1425762
• Proteomics data: PRIDE repository with the identifier PXD066488
Repository contents
1. NMR_RawData_MetaData.zip
Contains processed 1H NMR spectral data and associated metadata used for metabolomic analysis.
2. Plots_16S.zip
R scripts and processed data (corresponding to Supplementary Table S2) used to generate microbiome analysis figures and statistical analysis.
3. Plots_NMR.zip
R scripts and processed data (corresponding to Supplementary Table S4) used for statistical analysis and visualization of NMR metabolomics data.
4. Plots_Weight.zip
Scripts and processed data (corresponding to Supplementary Table S1) used for statistical analysis and visualization of body and gut weight measurements.
Contact
For questions regarding the data or analysis pipeline, please contact:
Saetbyeol Lee (lees@af.czu.cz)
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Additional details
Funding
- Ministry of Agriculture
- QK21010088
- Ministry of Education Youth and Sports
- LM2023064
- Science Foundation Ireland
- 12/RI/2346(3)
Software
- Programming language
- R